Gene : Bradi1g48740 B. distachyon v3.1
Defline:  (1 of 1) PTHR12416:SF2 - RRNA-PROCESSING PROTEIN FCF1 HOMOLOG Genomic Order:  6097
Name:  ? Bradi1g48740 Secondary Identifier:  ? PAC:32798375
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g48740 0.5kb upstream 0.5kb upstream 3580 true Bd1: 47582182-47585761 Brachypodium distachyon
Bradi1g48740 0.5kb upstream 0.5kb upstream 500 false Bd1: 47582182-47582681 Brachypodium distachyon
Bradi1g48740 0.5kb downstream 0.5kb downstream 3580 true Bd1: 47582682-47586261 Brachypodium distachyon
Bradi1g48740 0.5kb downstream 0.5kb downstream 500 false Bd1: 47585762-47586261 Brachypodium distachyon
Bradi1g48740 1.0kb upstream 1.0kb upstream 4080 true Bd1: 47581682-47585761 Brachypodium distachyon
Bradi1g48740 1.0kb upstream 1.0kb upstream 1000 false Bd1: 47581682-47582681 Brachypodium distachyon
Bradi1g48740 1.0kb downstream 1.0kb downstream 4080 true Bd1: 47582682-47586761 Brachypodium distachyon
Bradi1g48740 1.0kb downstream 1.0kb downstream 1000 false Bd1: 47585762-47586761 Brachypodium distachyon
Bradi1g48740 2.0kb upstream 2.0kb upstream 5080 true Bd1: 47580682-47585761 Brachypodium distachyon
Bradi1g48740 2.0kb upstream 2.0kb upstream 2000 false Bd1: 47580682-47582681 Brachypodium distachyon
Bradi1g48740 2.0kb downstream 2.0kb downstream 5080 true Bd1: 47582682-47587761 Brachypodium distachyon
Bradi1g48740 2.0kb downstream 2.0kb downstream 2000 false Bd1: 47585762-47587761 Brachypodium distachyon
Bradi1g48740 5.0kb upstream 5.0kb upstream 8080 true Bd1: 47577682-47585761 Brachypodium distachyon
Bradi1g48740 5.0kb upstream 5.0kb upstream 5000 false Bd1: 47577682-47582681 Brachypodium distachyon
Bradi1g48740 5.0kb downstream 5.0kb downstream 8080 true Bd1: 47582682-47590761 Brachypodium distachyon
Bradi1g48740 5.0kb downstream 5.0kb downstream 5000 false Bd1: 47585762-47590761 Brachypodium distachyon
Bradi1g48740 10.0kb upstream 10.0kb upstream 13080 true Bd1: 47572682-47585761 Brachypodium distachyon
Bradi1g48740 10.0kb upstream 10.0kb upstream 10000 false Bd1: 47572682-47582681 Brachypodium distachyon
Bradi1g48740 10.0kb downstream 10.0kb downstream 13080 true Bd1: 47582682-47595761 Brachypodium distachyon
Bradi1g48740 10.0kb downstream 10.0kb downstream 10000 false Bd1: 47585762-47595761 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573088 5269 Grass View MSA
122042240 5273 Angiosperm View MSA
121350234 5274 Embryophyte View MSA
123426184 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.549       High
cufflinks 4.61        
cufflinks 4.245        
cufflinks 5.133        
cufflinks 2.82       Low
cufflinks 3.989        
cufflinks 4.308        
cufflinks 3.877        
cufflinks 3.621        
cufflinks 4.798        
cufflinks 2.081       Low
cufflinks 2.932        
cufflinks 1.845       Low
cufflinks 2.273       Low
cufflinks 3.591        
cufflinks 3.815        
cufflinks 4.408        
cufflinks 5.972       High
cufflinks 4.546        
cufflinks 5.735       High
cufflinks 4.739        
cufflinks 3.637        
cufflinks 3.472        
cufflinks 3.579        
cufflinks 5.009        
cufflinks 4.839        
cufflinks 2.818       Low
cufflinks 4.334        
cufflinks 4.005        
cufflinks 4.531        

0 Strain