Gene : Bradi5g16655 B. distachyon v3.1
Defline:  (1 of 27) PF03000 - NPH3 family (NPH3) Genomic Order:  1903
Name:  ? Bradi5g16655 Secondary Identifier:  ? PAC:32807468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g16655 0.5kb upstream 0.5kb upstream 1239 true Bd5: 20100561-20101799 Brachypodium distachyon
Bradi5g16655 0.5kb upstream 0.5kb upstream 500 false Bd5: 20100561-20101060 Brachypodium distachyon
Bradi5g16655 0.5kb downstream 0.5kb downstream 1239 true Bd5: 20101061-20102299 Brachypodium distachyon
Bradi5g16655 0.5kb downstream 0.5kb downstream 500 false Bd5: 20101800-20102299 Brachypodium distachyon
Bradi5g16655 1.0kb upstream 1.0kb upstream 1739 true Bd5: 20100061-20101799 Brachypodium distachyon
Bradi5g16655 1.0kb upstream 1.0kb upstream 1000 false Bd5: 20100061-20101060 Brachypodium distachyon
Bradi5g16655 1.0kb downstream 1.0kb downstream 1739 true Bd5: 20101061-20102799 Brachypodium distachyon
Bradi5g16655 1.0kb downstream 1.0kb downstream 1000 false Bd5: 20101800-20102799 Brachypodium distachyon
Bradi5g16655 2.0kb upstream 2.0kb upstream 2739 true Bd5: 20099061-20101799 Brachypodium distachyon
Bradi5g16655 2.0kb upstream 2.0kb upstream 2000 false Bd5: 20099061-20101060 Brachypodium distachyon
Bradi5g16655 2.0kb downstream 2.0kb downstream 2739 true Bd5: 20101061-20103799 Brachypodium distachyon
Bradi5g16655 2.0kb downstream 2.0kb downstream 2000 false Bd5: 20101800-20103799 Brachypodium distachyon
Bradi5g16655 5.0kb upstream 5.0kb upstream 5739 true Bd5: 20096061-20101799 Brachypodium distachyon
Bradi5g16655 5.0kb upstream 5.0kb upstream 5000 false Bd5: 20096061-20101060 Brachypodium distachyon
Bradi5g16655 5.0kb downstream 5.0kb downstream 5739 true Bd5: 20101061-20106799 Brachypodium distachyon
Bradi5g16655 5.0kb downstream 5.0kb downstream 5000 false Bd5: 20101800-20106799 Brachypodium distachyon
Bradi5g16655 10.0kb upstream 10.0kb upstream 10739 true Bd5: 20091061-20101799 Brachypodium distachyon
Bradi5g16655 10.0kb upstream 10.0kb upstream 10000 false Bd5: 20091061-20101060 Brachypodium distachyon
Bradi5g16655 10.0kb downstream 10.0kb downstream 10739 true Bd5: 20101061-20111799 Brachypodium distachyon
Bradi5g16655 10.0kb downstream 10.0kb downstream 10000 false Bd5: 20101800-20111799 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586284 5269 Grass View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.061     Low  
cufflinks 0.017     Low Low
cufflinks 0.018     Low Low
cufflinks 0.085     Low  
cufflinks 0.153       High
cufflinks 0.061     Low  
cufflinks 0.054     Low  
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low Low
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.091     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low Low
cufflinks 0.043     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.024     Low Low
cufflinks 0.022     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.042     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.069     Low  

0 Strain