Gene : Bradi5g18210 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Genomic Order:  2103
Name:  ? Bradi5g18210 Secondary Identifier:  ? PAC:32807149
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6441 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g18210 0.5kb upstream 0.5kb upstream 3719 true Bd5: 21416836-21420554 Brachypodium distachyon
Bradi5g18210 0.5kb upstream 0.5kb upstream 500 false Bd5: 21420055-21420554 Brachypodium distachyon
Bradi5g18210 0.5kb downstream 0.5kb downstream 3719 true Bd5: 21416336-21420054 Brachypodium distachyon
Bradi5g18210 0.5kb downstream 0.5kb downstream 500 false Bd5: 21416336-21416835 Brachypodium distachyon
Bradi5g18210 1.0kb upstream 1.0kb upstream 4219 true Bd5: 21416836-21421054 Brachypodium distachyon
Bradi5g18210 1.0kb upstream 1.0kb upstream 1000 false Bd5: 21420055-21421054 Brachypodium distachyon
Bradi5g18210 1.0kb downstream 1.0kb downstream 4219 true Bd5: 21415836-21420054 Brachypodium distachyon
Bradi5g18210 1.0kb downstream 1.0kb downstream 1000 false Bd5: 21415836-21416835 Brachypodium distachyon
Bradi5g18210 2.0kb upstream 2.0kb upstream 5219 true Bd5: 21416836-21422054 Brachypodium distachyon
Bradi5g18210 2.0kb upstream 2.0kb upstream 2000 false Bd5: 21420055-21422054 Brachypodium distachyon
Bradi5g18210 2.0kb downstream 2.0kb downstream 5219 true Bd5: 21414836-21420054 Brachypodium distachyon
Bradi5g18210 2.0kb downstream 2.0kb downstream 2000 false Bd5: 21414836-21416835 Brachypodium distachyon
Bradi5g18210 5.0kb upstream 5.0kb upstream 8219 true Bd5: 21416836-21425054 Brachypodium distachyon
Bradi5g18210 5.0kb upstream 5.0kb upstream 5000 false Bd5: 21420055-21425054 Brachypodium distachyon
Bradi5g18210 5.0kb downstream 5.0kb downstream 8219 true Bd5: 21411836-21420054 Brachypodium distachyon
Bradi5g18210 5.0kb downstream 5.0kb downstream 5000 false Bd5: 21411836-21416835 Brachypodium distachyon
Bradi5g18210 10.0kb upstream 10.0kb upstream 13219 true Bd5: 21416836-21430054 Brachypodium distachyon
Bradi5g18210 10.0kb upstream 10.0kb upstream 10000 false Bd5: 21420055-21430054 Brachypodium distachyon
Bradi5g18210 10.0kb downstream 10.0kb downstream 13219 true Bd5: 21406836-21420054 Brachypodium distachyon
Bradi5g18210 10.0kb downstream 10.0kb downstream 10000 false Bd5: 21406836-21416835 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572683 5269 Grass View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.721        
cufflinks 2.154        
cufflinks 1.832        
cufflinks 2.058        
cufflinks 1.031       Low
cufflinks 1.812        
cufflinks 2.025        
cufflinks 1.692        
cufflinks 1.87        
cufflinks 1.248        
cufflinks 1.541        
cufflinks 1.633        
cufflinks 0.939       Low
cufflinks 1.29        
cufflinks 1.056       Low
cufflinks 2.097        
cufflinks 1.6        
cufflinks 3.418       High
cufflinks 1.983        
cufflinks 0.992       Low
cufflinks 2.105        
cufflinks 1.535        
cufflinks 1.605        
cufflinks 1.483        
cufflinks 1.942        
cufflinks 1.676        
cufflinks 1.132       Low
cufflinks 1.616        
cufflinks 1.446        
cufflinks 2.758       High

0 Strain