Gene : Bradi5g17750 B. distachyon v3.1
Defline:  (1 of 2) K09493 - T-complex protein 1 subunit alpha (CCT1, TCP1) Genomic Order:  2048
Name:  ? Bradi5g17750 Secondary Identifier:  ? PAC:32809301
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g17750 0.5kb upstream 0.5kb upstream 6871 true Bd5: 21087065-21093935 Brachypodium distachyon
Bradi5g17750 0.5kb upstream 0.5kb upstream 500 false Bd5: 21087065-21087564 Brachypodium distachyon
Bradi5g17750 0.5kb downstream 0.5kb downstream 6871 true Bd5: 21087565-21094435 Brachypodium distachyon
Bradi5g17750 0.5kb downstream 0.5kb downstream 500 false Bd5: 21093936-21094435 Brachypodium distachyon
Bradi5g17750 1.0kb upstream 1.0kb upstream 7371 true Bd5: 21086565-21093935 Brachypodium distachyon
Bradi5g17750 1.0kb upstream 1.0kb upstream 1000 false Bd5: 21086565-21087564 Brachypodium distachyon
Bradi5g17750 1.0kb downstream 1.0kb downstream 7371 true Bd5: 21087565-21094935 Brachypodium distachyon
Bradi5g17750 1.0kb downstream 1.0kb downstream 1000 false Bd5: 21093936-21094935 Brachypodium distachyon
Bradi5g17750 2.0kb upstream 2.0kb upstream 8371 true Bd5: 21085565-21093935 Brachypodium distachyon
Bradi5g17750 2.0kb upstream 2.0kb upstream 2000 false Bd5: 21085565-21087564 Brachypodium distachyon
Bradi5g17750 2.0kb downstream 2.0kb downstream 8371 true Bd5: 21087565-21095935 Brachypodium distachyon
Bradi5g17750 2.0kb downstream 2.0kb downstream 2000 false Bd5: 21093936-21095935 Brachypodium distachyon
Bradi5g17750 5.0kb upstream 5.0kb upstream 11371 true Bd5: 21082565-21093935 Brachypodium distachyon
Bradi5g17750 5.0kb upstream 5.0kb upstream 5000 false Bd5: 21082565-21087564 Brachypodium distachyon
Bradi5g17750 5.0kb downstream 5.0kb downstream 11371 true Bd5: 21087565-21098935 Brachypodium distachyon
Bradi5g17750 5.0kb downstream 5.0kb downstream 5000 false Bd5: 21093936-21098935 Brachypodium distachyon
Bradi5g17750 10.0kb upstream 10.0kb upstream 16371 true Bd5: 21077565-21093935 Brachypodium distachyon
Bradi5g17750 10.0kb upstream 10.0kb upstream 10000 false Bd5: 21077565-21087564 Brachypodium distachyon
Bradi5g17750 10.0kb downstream 10.0kb downstream 16371 true Bd5: 21087565-21103935 Brachypodium distachyon
Bradi5g17750 10.0kb downstream 10.0kb downstream 10000 false Bd5: 21093936-21103935 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575057 5269 Grass View MSA
122046551 5273 Angiosperm View MSA
121345633 5274 Embryophyte View MSA
123423902 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.265        
cufflinks 12.896     High  
cufflinks 10.511     High  
cufflinks 13.37     High  
cufflinks 7.159        
cufflinks 10.885     High  
cufflinks 10.554     High  
cufflinks 8.382        
cufflinks 10.143     High  
cufflinks 7.759        
cufflinks 7.272        
cufflinks 8.483        
cufflinks 4.227       Low
cufflinks 6.016       Low
cufflinks 5.837       Low
cufflinks 10.787     High  
cufflinks 9.169        
cufflinks 21.009     High High
cufflinks 10.566        
cufflinks 5.206       Low
cufflinks 12.269     High  
cufflinks 8.663        
cufflinks 8.021        
cufflinks 9.412     High  
cufflinks 11.617     High  
cufflinks 10.44        
cufflinks 7.182        
cufflinks 9.146        
cufflinks 9.4        
cufflinks 12.526     High  

0 Strain