Gene : Bradi1g52260 B. distachyon v3.1
Defline:  (1 of 2) PTHR23151//PTHR23151:SF59 - DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  6562
Name:  ? Bradi1g52260 Secondary Identifier:  ? PAC:32806575
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5173 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PYRUVDEHYD-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52260 0.5kb upstream 0.5kb upstream 5592 true Bd1: 50773970-50779561 Brachypodium distachyon
Bradi1g52260 0.5kb upstream 0.5kb upstream 500 false Bd1: 50779062-50779561 Brachypodium distachyon
Bradi1g52260 0.5kb downstream 0.5kb downstream 5592 true Bd1: 50773470-50779061 Brachypodium distachyon
Bradi1g52260 0.5kb downstream 0.5kb downstream 500 false Bd1: 50773470-50773969 Brachypodium distachyon
Bradi1g52260 1.0kb upstream 1.0kb upstream 6092 true Bd1: 50773970-50780061 Brachypodium distachyon
Bradi1g52260 1.0kb upstream 1.0kb upstream 1000 false Bd1: 50779062-50780061 Brachypodium distachyon
Bradi1g52260 1.0kb downstream 1.0kb downstream 6092 true Bd1: 50772970-50779061 Brachypodium distachyon
Bradi1g52260 1.0kb downstream 1.0kb downstream 1000 false Bd1: 50772970-50773969 Brachypodium distachyon
Bradi1g52260 2.0kb upstream 2.0kb upstream 7092 true Bd1: 50773970-50781061 Brachypodium distachyon
Bradi1g52260 2.0kb upstream 2.0kb upstream 2000 false Bd1: 50779062-50781061 Brachypodium distachyon
Bradi1g52260 2.0kb downstream 2.0kb downstream 7092 true Bd1: 50771970-50779061 Brachypodium distachyon
Bradi1g52260 2.0kb downstream 2.0kb downstream 2000 false Bd1: 50771970-50773969 Brachypodium distachyon
Bradi1g52260 5.0kb upstream 5.0kb upstream 10092 true Bd1: 50773970-50784061 Brachypodium distachyon
Bradi1g52260 5.0kb upstream 5.0kb upstream 5000 false Bd1: 50779062-50784061 Brachypodium distachyon
Bradi1g52260 5.0kb downstream 5.0kb downstream 10092 true Bd1: 50768970-50779061 Brachypodium distachyon
Bradi1g52260 5.0kb downstream 5.0kb downstream 5000 false Bd1: 50768970-50773969 Brachypodium distachyon
Bradi1g52260 10.0kb upstream 10.0kb upstream 15092 true Bd1: 50773970-50789061 Brachypodium distachyon
Bradi1g52260 10.0kb upstream 10.0kb upstream 10000 false Bd1: 50779062-50789061 Brachypodium distachyon
Bradi1g52260 10.0kb downstream 10.0kb downstream 15092 true Bd1: 50763970-50779061 Brachypodium distachyon
Bradi1g52260 10.0kb downstream 10.0kb downstream 10000 false Bd1: 50763970-50773969 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586355 5269 Grass View MSA
122043289 5273 Angiosperm View MSA
121343868 5274 Embryophyte View MSA
123426306 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.003       High
cufflinks 1.485        
cufflinks 1.268        
cufflinks 1.39        
cufflinks 1.606        
cufflinks 1.389        
cufflinks 1.239        
cufflinks 1.316        
cufflinks 1.416        
cufflinks 0.835       Low
cufflinks 0.687       Low
cufflinks 1.481        
cufflinks 0.789       Low
cufflinks 0.688       Low
cufflinks 1.697        
cufflinks 1.572        
cufflinks 1.294        
cufflinks 3.534       High
cufflinks 1.217        
cufflinks 0.914        
cufflinks 1.546        
cufflinks 1.268        
cufflinks 1.312        
cufflinks 1.443        
cufflinks 1.265        
cufflinks 1.185        
cufflinks 0.818       Low
cufflinks 1.045        
cufflinks 1.069        
cufflinks 1.964       High

0 Strain