Gene : Bradi1g52180 B. distachyon v3.1
Defline:  (1 of 1) PTHR21181:SF13 - NADH DEHYDROGENASE (UBIQUINONE) COMPLEX I, ASSEMBLY FACTOR 6 Genomic Order:  6554
Name:  ? Bradi1g52180 Secondary Identifier:  ? PAC:32805223
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6475 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52180 0.5kb upstream 0.5kb upstream 5169 true Bd1: 50705823-50710991 Brachypodium distachyon
Bradi1g52180 0.5kb upstream 0.5kb upstream 500 false Bd1: 50705823-50706322 Brachypodium distachyon
Bradi1g52180 0.5kb downstream 0.5kb downstream 5169 true Bd1: 50706323-50711491 Brachypodium distachyon
Bradi1g52180 0.5kb downstream 0.5kb downstream 500 false Bd1: 50710992-50711491 Brachypodium distachyon
Bradi1g52180 1.0kb upstream 1.0kb upstream 5669 true Bd1: 50705323-50710991 Brachypodium distachyon
Bradi1g52180 1.0kb upstream 1.0kb upstream 1000 false Bd1: 50705323-50706322 Brachypodium distachyon
Bradi1g52180 1.0kb downstream 1.0kb downstream 5669 true Bd1: 50706323-50711991 Brachypodium distachyon
Bradi1g52180 1.0kb downstream 1.0kb downstream 1000 false Bd1: 50710992-50711991 Brachypodium distachyon
Bradi1g52180 2.0kb upstream 2.0kb upstream 6669 true Bd1: 50704323-50710991 Brachypodium distachyon
Bradi1g52180 2.0kb upstream 2.0kb upstream 2000 false Bd1: 50704323-50706322 Brachypodium distachyon
Bradi1g52180 2.0kb downstream 2.0kb downstream 6669 true Bd1: 50706323-50712991 Brachypodium distachyon
Bradi1g52180 2.0kb downstream 2.0kb downstream 2000 false Bd1: 50710992-50712991 Brachypodium distachyon
Bradi1g52180 5.0kb upstream 5.0kb upstream 9669 true Bd1: 50701323-50710991 Brachypodium distachyon
Bradi1g52180 5.0kb upstream 5.0kb upstream 5000 false Bd1: 50701323-50706322 Brachypodium distachyon
Bradi1g52180 5.0kb downstream 5.0kb downstream 9669 true Bd1: 50706323-50715991 Brachypodium distachyon
Bradi1g52180 5.0kb downstream 5.0kb downstream 5000 false Bd1: 50710992-50715991 Brachypodium distachyon
Bradi1g52180 10.0kb upstream 10.0kb upstream 14669 true Bd1: 50696323-50710991 Brachypodium distachyon
Bradi1g52180 10.0kb upstream 10.0kb upstream 10000 false Bd1: 50696323-50706322 Brachypodium distachyon
Bradi1g52180 10.0kb downstream 10.0kb downstream 14669 true Bd1: 50706323-50720991 Brachypodium distachyon
Bradi1g52180 10.0kb downstream 10.0kb downstream 10000 false Bd1: 50710992-50720991 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577338 5269 Grass View MSA
122043915 5273 Angiosperm View MSA
121344708 5274 Embryophyte View MSA
123424120 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.258        
cufflinks 2.136        
cufflinks 3.312        
cufflinks 2.006        
cufflinks 2.016        
cufflinks 1.857        
cufflinks 2.191        
cufflinks 1.703        
cufflinks 1.944        
cufflinks 2.49        
cufflinks 0.813       Low
cufflinks 1.84        
cufflinks 0.777       Low
cufflinks 0.851       Low
cufflinks 1.07       Low
cufflinks 1.804        
cufflinks 1.876        
cufflinks 3.818       High
cufflinks 4.482       High
cufflinks 1.15       Low
cufflinks 3.837       High
cufflinks 2.384        
cufflinks 1.829        
cufflinks 1.609        
cufflinks 1.794        
cufflinks 3.339        
cufflinks 1.042       Low
cufflinks 3.782       High
cufflinks 3.301        
cufflinks 3.394        

0 Strain