Gene : Bradi1g52291 B. distachyon v3.1
Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  6566
Name:  ? Bradi1g52291 Secondary Identifier:  ? PAC:32793347
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52291 0.5kb upstream 0.5kb upstream 3642 true Bd1: 50792921-50796562 Brachypodium distachyon
Bradi1g52291 0.5kb upstream 0.5kb upstream 500 false Bd1: 50796063-50796562 Brachypodium distachyon
Bradi1g52291 0.5kb downstream 0.5kb downstream 3642 true Bd1: 50792421-50796062 Brachypodium distachyon
Bradi1g52291 0.5kb downstream 0.5kb downstream 500 false Bd1: 50792421-50792920 Brachypodium distachyon
Bradi1g52291 1.0kb upstream 1.0kb upstream 4142 true Bd1: 50792921-50797062 Brachypodium distachyon
Bradi1g52291 1.0kb upstream 1.0kb upstream 1000 false Bd1: 50796063-50797062 Brachypodium distachyon
Bradi1g52291 1.0kb downstream 1.0kb downstream 4142 true Bd1: 50791921-50796062 Brachypodium distachyon
Bradi1g52291 1.0kb downstream 1.0kb downstream 1000 false Bd1: 50791921-50792920 Brachypodium distachyon
Bradi1g52291 2.0kb upstream 2.0kb upstream 5142 true Bd1: 50792921-50798062 Brachypodium distachyon
Bradi1g52291 2.0kb upstream 2.0kb upstream 2000 false Bd1: 50796063-50798062 Brachypodium distachyon
Bradi1g52291 2.0kb downstream 2.0kb downstream 5142 true Bd1: 50790921-50796062 Brachypodium distachyon
Bradi1g52291 2.0kb downstream 2.0kb downstream 2000 false Bd1: 50790921-50792920 Brachypodium distachyon
Bradi1g52291 5.0kb upstream 5.0kb upstream 8142 true Bd1: 50792921-50801062 Brachypodium distachyon
Bradi1g52291 5.0kb upstream 5.0kb upstream 5000 false Bd1: 50796063-50801062 Brachypodium distachyon
Bradi1g52291 5.0kb downstream 5.0kb downstream 8142 true Bd1: 50787921-50796062 Brachypodium distachyon
Bradi1g52291 5.0kb downstream 5.0kb downstream 5000 false Bd1: 50787921-50792920 Brachypodium distachyon
Bradi1g52291 10.0kb upstream 10.0kb upstream 13142 true Bd1: 50792921-50806062 Brachypodium distachyon
Bradi1g52291 10.0kb upstream 10.0kb upstream 10000 false Bd1: 50796063-50806062 Brachypodium distachyon
Bradi1g52291 10.0kb downstream 10.0kb downstream 13142 true Bd1: 50782921-50796062 Brachypodium distachyon
Bradi1g52291 10.0kb downstream 10.0kb downstream 10000 false Bd1: 50782921-50792920 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584432 5269 Grass View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.343        
cufflinks 1.748        
cufflinks 2.17        
cufflinks 1.197        
cufflinks 2.738        
cufflinks 1.124        
cufflinks 1.692        
cufflinks 1.493        
cufflinks 1.207        
cufflinks 1.442        
cufflinks 1.853        
cufflinks 1.255        
cufflinks 0.897       Low
cufflinks 1.041        
cufflinks 0.721       Low
cufflinks 1.254        
cufflinks 1.666        
cufflinks 3.492        
cufflinks 13.273     High High
cufflinks 10.062       High
cufflinks 2.11        
cufflinks 1.844        
cufflinks 1.532        
cufflinks 0.803       Low
cufflinks 0.901       Low
cufflinks 2.095        
cufflinks 1.585        
cufflinks 2.641        
cufflinks 1.81        
cufflinks 1.632        

0 Strain