Gene : Bradi1g52530 B. distachyon v3.1
Defline:  (1 of 1) PTHR10459//PTHR10459:SF60 - DNA LIGASE // POLY [ADP-RIBOSE] POLYMERASE 1 Genomic Order:  6596
Name:  ? Bradi1g52530 Secondary Identifier:  ? PAC:32806449
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52530 0.5kb upstream 0.5kb upstream 14692 true Bd1: 50959545-50974236 Brachypodium distachyon
Bradi1g52530 0.5kb upstream 0.5kb upstream 500 false Bd1: 50973737-50974236 Brachypodium distachyon
Bradi1g52530 0.5kb downstream 0.5kb downstream 14692 true Bd1: 50959045-50973736 Brachypodium distachyon
Bradi1g52530 0.5kb downstream 0.5kb downstream 500 false Bd1: 50959045-50959544 Brachypodium distachyon
Bradi1g52530 1.0kb upstream 1.0kb upstream 15192 true Bd1: 50959545-50974736 Brachypodium distachyon
Bradi1g52530 1.0kb upstream 1.0kb upstream 1000 false Bd1: 50973737-50974736 Brachypodium distachyon
Bradi1g52530 1.0kb downstream 1.0kb downstream 15192 true Bd1: 50958545-50973736 Brachypodium distachyon
Bradi1g52530 1.0kb downstream 1.0kb downstream 1000 false Bd1: 50958545-50959544 Brachypodium distachyon
Bradi1g52530 2.0kb upstream 2.0kb upstream 16192 true Bd1: 50959545-50975736 Brachypodium distachyon
Bradi1g52530 2.0kb upstream 2.0kb upstream 2000 false Bd1: 50973737-50975736 Brachypodium distachyon
Bradi1g52530 2.0kb downstream 2.0kb downstream 16192 true Bd1: 50957545-50973736 Brachypodium distachyon
Bradi1g52530 2.0kb downstream 2.0kb downstream 2000 false Bd1: 50957545-50959544 Brachypodium distachyon
Bradi1g52530 5.0kb upstream 5.0kb upstream 19192 true Bd1: 50959545-50978736 Brachypodium distachyon
Bradi1g52530 5.0kb upstream 5.0kb upstream 5000 false Bd1: 50973737-50978736 Brachypodium distachyon
Bradi1g52530 5.0kb downstream 5.0kb downstream 19192 true Bd1: 50954545-50973736 Brachypodium distachyon
Bradi1g52530 5.0kb downstream 5.0kb downstream 5000 false Bd1: 50954545-50959544 Brachypodium distachyon
Bradi1g52530 10.0kb upstream 10.0kb upstream 24192 true Bd1: 50959545-50983736 Brachypodium distachyon
Bradi1g52530 10.0kb upstream 10.0kb upstream 10000 false Bd1: 50973737-50983736 Brachypodium distachyon
Bradi1g52530 10.0kb downstream 10.0kb downstream 24192 true Bd1: 50949545-50973736 Brachypodium distachyon
Bradi1g52530 10.0kb downstream 10.0kb downstream 10000 false Bd1: 50949545-50959544 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579687 5269 Grass View MSA
122044307 5273 Angiosperm View MSA
121344199 5274 Embryophyte View MSA
123379997 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.532        
cufflinks 0.931        
cufflinks 0.942        
cufflinks 0.839        
cufflinks 0.406       Low
cufflinks 0.884        
cufflinks 0.747        
cufflinks 0.692        
cufflinks 0.852        
cufflinks 0.757        
cufflinks 0.576        
cufflinks 0.781        
cufflinks 0.505        
cufflinks 0.493        
cufflinks 0.453        
cufflinks 0.85        
cufflinks 0.529        
cufflinks 1.009       High
cufflinks 0.492        
cufflinks 0.149       Low
cufflinks 0.709        
cufflinks 1.012       High
cufflinks 0.728        
cufflinks 0.758        
cufflinks 0.807        
cufflinks 0.899        
cufflinks 0.501        
cufflinks 0.798        
cufflinks 0.866        
cufflinks 0.977        

0 Strain