Gene : Bradi1g52390 B. distachyon v3.1
Defline:  (1 of 1) PTHR23315//PTHR23315:SF111 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 14 Genomic Order:  6577
Name:  ? Bradi1g52390 Secondary Identifier:  ? PAC:32793907
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7511 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52390 0.5kb upstream 0.5kb upstream 2885 true Bd1: 50836679-50839563 Brachypodium distachyon
Bradi1g52390 0.5kb upstream 0.5kb upstream 500 false Bd1: 50839064-50839563 Brachypodium distachyon
Bradi1g52390 0.5kb downstream 0.5kb downstream 2885 true Bd1: 50836179-50839063 Brachypodium distachyon
Bradi1g52390 0.5kb downstream 0.5kb downstream 500 false Bd1: 50836179-50836678 Brachypodium distachyon
Bradi1g52390 1.0kb upstream 1.0kb upstream 3385 true Bd1: 50836679-50840063 Brachypodium distachyon
Bradi1g52390 1.0kb upstream 1.0kb upstream 1000 false Bd1: 50839064-50840063 Brachypodium distachyon
Bradi1g52390 1.0kb downstream 1.0kb downstream 3385 true Bd1: 50835679-50839063 Brachypodium distachyon
Bradi1g52390 1.0kb downstream 1.0kb downstream 1000 false Bd1: 50835679-50836678 Brachypodium distachyon
Bradi1g52390 2.0kb upstream 2.0kb upstream 4385 true Bd1: 50836679-50841063 Brachypodium distachyon
Bradi1g52390 2.0kb upstream 2.0kb upstream 2000 false Bd1: 50839064-50841063 Brachypodium distachyon
Bradi1g52390 2.0kb downstream 2.0kb downstream 4385 true Bd1: 50834679-50839063 Brachypodium distachyon
Bradi1g52390 2.0kb downstream 2.0kb downstream 2000 false Bd1: 50834679-50836678 Brachypodium distachyon
Bradi1g52390 5.0kb upstream 5.0kb upstream 7385 true Bd1: 50836679-50844063 Brachypodium distachyon
Bradi1g52390 5.0kb upstream 5.0kb upstream 5000 false Bd1: 50839064-50844063 Brachypodium distachyon
Bradi1g52390 5.0kb downstream 5.0kb downstream 7385 true Bd1: 50831679-50839063 Brachypodium distachyon
Bradi1g52390 5.0kb downstream 5.0kb downstream 5000 false Bd1: 50831679-50836678 Brachypodium distachyon
Bradi1g52390 10.0kb upstream 10.0kb upstream 12385 true Bd1: 50836679-50849063 Brachypodium distachyon
Bradi1g52390 10.0kb upstream 10.0kb upstream 10000 false Bd1: 50839064-50849063 Brachypodium distachyon
Bradi1g52390 10.0kb downstream 10.0kb downstream 12385 true Bd1: 50826679-50839063 Brachypodium distachyon
Bradi1g52390 10.0kb downstream 10.0kb downstream 10000 false Bd1: 50826679-50836678 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574030 5269 Grass View MSA
122042286 5273 Angiosperm View MSA
121349135 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.237        
cufflinks 10.404     High  
cufflinks 10.387     High  
cufflinks 8.22        
cufflinks 3.821       Low
cufflinks 9.487     High  
cufflinks 9.589     High  
cufflinks 9.184     High  
cufflinks 8.341        
cufflinks 6.9        
cufflinks 11.169     High  
cufflinks 9.957     High  
cufflinks 9.544     High  
cufflinks 7.926     High  
cufflinks 7.61        
cufflinks 10.791     High  
cufflinks 6.079        
cufflinks 16.701     High High
cufflinks 6.034        
cufflinks 2.592       Low
cufflinks 10.669        
cufflinks 7.821        
cufflinks 7.617        
cufflinks 8.101        
cufflinks 7.127        
cufflinks 9.073        
cufflinks 11.788     High  
cufflinks 9.343        
cufflinks 8.745        
cufflinks 9.127        

0 Strain