Gene : Bradi1g52580 B. distachyon v3.1
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  6606
Name:  ? Bradi1g52580 Secondary Identifier:  ? PAC:32801973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g52580 0.5kb upstream 0.5kb upstream 1863 true Bd1: 51046897-51048759 Brachypodium distachyon
Bradi1g52580 0.5kb upstream 0.5kb upstream 500 false Bd1: 51048260-51048759 Brachypodium distachyon
Bradi1g52580 0.5kb downstream 0.5kb downstream 1863 true Bd1: 51046397-51048259 Brachypodium distachyon
Bradi1g52580 0.5kb downstream 0.5kb downstream 500 false Bd1: 51046397-51046896 Brachypodium distachyon
Bradi1g52580 1.0kb upstream 1.0kb upstream 2363 true Bd1: 51046897-51049259 Brachypodium distachyon
Bradi1g52580 1.0kb upstream 1.0kb upstream 1000 false Bd1: 51048260-51049259 Brachypodium distachyon
Bradi1g52580 1.0kb downstream 1.0kb downstream 2363 true Bd1: 51045897-51048259 Brachypodium distachyon
Bradi1g52580 1.0kb downstream 1.0kb downstream 1000 false Bd1: 51045897-51046896 Brachypodium distachyon
Bradi1g52580 2.0kb upstream 2.0kb upstream 3363 true Bd1: 51046897-51050259 Brachypodium distachyon
Bradi1g52580 2.0kb upstream 2.0kb upstream 2000 false Bd1: 51048260-51050259 Brachypodium distachyon
Bradi1g52580 2.0kb downstream 2.0kb downstream 3363 true Bd1: 51044897-51048259 Brachypodium distachyon
Bradi1g52580 2.0kb downstream 2.0kb downstream 2000 false Bd1: 51044897-51046896 Brachypodium distachyon
Bradi1g52580 5.0kb upstream 5.0kb upstream 6363 true Bd1: 51046897-51053259 Brachypodium distachyon
Bradi1g52580 5.0kb upstream 5.0kb upstream 5000 false Bd1: 51048260-51053259 Brachypodium distachyon
Bradi1g52580 5.0kb downstream 5.0kb downstream 6363 true Bd1: 51041897-51048259 Brachypodium distachyon
Bradi1g52580 5.0kb downstream 5.0kb downstream 5000 false Bd1: 51041897-51046896 Brachypodium distachyon
Bradi1g52580 10.0kb upstream 10.0kb upstream 11363 true Bd1: 51046897-51058259 Brachypodium distachyon
Bradi1g52580 10.0kb upstream 10.0kb upstream 10000 false Bd1: 51048260-51058259 Brachypodium distachyon
Bradi1g52580 10.0kb downstream 10.0kb downstream 11363 true Bd1: 51036897-51048259 Brachypodium distachyon
Bradi1g52580 10.0kb downstream 10.0kb downstream 10000 false Bd1: 51036897-51046896 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577325 5269 Grass View MSA
122042999 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.064     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.079     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.048     Low  
cufflinks 0.659       High
cufflinks 0.224       High
cufflinks 0.022     Low  
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.258       High
cufflinks 0.01     Low  
cufflinks 0.01     Low  
cufflinks 0.018     Low  

0 Strain