Gene : Bradi1g53347 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  6685
Name:  ? Bradi1g53347 Secondary Identifier:  ? PAC:32801248
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g53347 0.5kb upstream 0.5kb upstream 4280 true Bd1: 51883698-51887977 Brachypodium distachyon
Bradi1g53347 0.5kb upstream 0.5kb upstream 500 false Bd1: 51883698-51884197 Brachypodium distachyon
Bradi1g53347 0.5kb downstream 0.5kb downstream 4280 true Bd1: 51884198-51888477 Brachypodium distachyon
Bradi1g53347 0.5kb downstream 0.5kb downstream 500 false Bd1: 51887978-51888477 Brachypodium distachyon
Bradi1g53347 1.0kb upstream 1.0kb upstream 4780 true Bd1: 51883198-51887977 Brachypodium distachyon
Bradi1g53347 1.0kb upstream 1.0kb upstream 1000 false Bd1: 51883198-51884197 Brachypodium distachyon
Bradi1g53347 1.0kb downstream 1.0kb downstream 4780 true Bd1: 51884198-51888977 Brachypodium distachyon
Bradi1g53347 1.0kb downstream 1.0kb downstream 1000 false Bd1: 51887978-51888977 Brachypodium distachyon
Bradi1g53347 2.0kb upstream 2.0kb upstream 5780 true Bd1: 51882198-51887977 Brachypodium distachyon
Bradi1g53347 2.0kb upstream 2.0kb upstream 2000 false Bd1: 51882198-51884197 Brachypodium distachyon
Bradi1g53347 2.0kb downstream 2.0kb downstream 5780 true Bd1: 51884198-51889977 Brachypodium distachyon
Bradi1g53347 2.0kb downstream 2.0kb downstream 2000 false Bd1: 51887978-51889977 Brachypodium distachyon
Bradi1g53347 5.0kb upstream 5.0kb upstream 8780 true Bd1: 51879198-51887977 Brachypodium distachyon
Bradi1g53347 5.0kb upstream 5.0kb upstream 5000 false Bd1: 51879198-51884197 Brachypodium distachyon
Bradi1g53347 5.0kb downstream 5.0kb downstream 8780 true Bd1: 51884198-51892977 Brachypodium distachyon
Bradi1g53347 5.0kb downstream 5.0kb downstream 5000 false Bd1: 51887978-51892977 Brachypodium distachyon
Bradi1g53347 10.0kb upstream 10.0kb upstream 13780 true Bd1: 51874198-51887977 Brachypodium distachyon
Bradi1g53347 10.0kb upstream 10.0kb upstream 10000 false Bd1: 51874198-51884197 Brachypodium distachyon
Bradi1g53347 10.0kb downstream 10.0kb downstream 13780 true Bd1: 51884198-51897977 Brachypodium distachyon
Bradi1g53347 10.0kb downstream 10.0kb downstream 10000 false Bd1: 51887978-51897977 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575773 5269 Grass View MSA
122042185 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.69        
cufflinks 3.81        
cufflinks 3.56        
cufflinks 2.634        
cufflinks 0.375       Low
cufflinks 3.265        
cufflinks 3.015        
cufflinks 2.205        
cufflinks 3.368        
cufflinks 1.411        
cufflinks 3.133        
cufflinks 3.408        
cufflinks 2.31        
cufflinks 1.996        
cufflinks 1.243        
cufflinks 2.916        
cufflinks 1.322        
cufflinks 3.593        
cufflinks 1.191        
cufflinks 0.453       Low
cufflinks 1.106        
cufflinks 3.828        
cufflinks 2.226        
cufflinks 2.554        
cufflinks 2.676        
cufflinks 2.97        
cufflinks 2.655        
cufflinks 3.152        
cufflinks 3.072        
cufflinks 3.343        

0 Strain