Gene : Bradi1g54210 B. distachyon v3.1
Defline:  (1 of 4) 2.4.1.82 - Galactinol--sucrose galactosyltransferase / Raffinose synthase Genomic Order:  6792
Name:  ? Bradi1g54210 Secondary Identifier:  ? PAC:32806254
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5337 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54210 0.5kb upstream 0.5kb upstream 4607 true Bd1: 52770572-52775178 Brachypodium distachyon
Bradi1g54210 0.5kb upstream 0.5kb upstream 500 false Bd1: 52774679-52775178 Brachypodium distachyon
Bradi1g54210 0.5kb downstream 0.5kb downstream 4607 true Bd1: 52770072-52774678 Brachypodium distachyon
Bradi1g54210 0.5kb downstream 0.5kb downstream 500 false Bd1: 52770072-52770571 Brachypodium distachyon
Bradi1g54210 1.0kb upstream 1.0kb upstream 5107 true Bd1: 52770572-52775678 Brachypodium distachyon
Bradi1g54210 1.0kb upstream 1.0kb upstream 1000 false Bd1: 52774679-52775678 Brachypodium distachyon
Bradi1g54210 1.0kb downstream 1.0kb downstream 5107 true Bd1: 52769572-52774678 Brachypodium distachyon
Bradi1g54210 1.0kb downstream 1.0kb downstream 1000 false Bd1: 52769572-52770571 Brachypodium distachyon
Bradi1g54210 2.0kb upstream 2.0kb upstream 6107 true Bd1: 52770572-52776678 Brachypodium distachyon
Bradi1g54210 2.0kb upstream 2.0kb upstream 2000 false Bd1: 52774679-52776678 Brachypodium distachyon
Bradi1g54210 2.0kb downstream 2.0kb downstream 6107 true Bd1: 52768572-52774678 Brachypodium distachyon
Bradi1g54210 2.0kb downstream 2.0kb downstream 2000 false Bd1: 52768572-52770571 Brachypodium distachyon
Bradi1g54210 5.0kb upstream 5.0kb upstream 9107 true Bd1: 52770572-52779678 Brachypodium distachyon
Bradi1g54210 5.0kb upstream 5.0kb upstream 5000 false Bd1: 52774679-52779678 Brachypodium distachyon
Bradi1g54210 5.0kb downstream 5.0kb downstream 9107 true Bd1: 52765572-52774678 Brachypodium distachyon
Bradi1g54210 5.0kb downstream 5.0kb downstream 5000 false Bd1: 52765572-52770571 Brachypodium distachyon
Bradi1g54210 10.0kb upstream 10.0kb upstream 14107 true Bd1: 52770572-52784678 Brachypodium distachyon
Bradi1g54210 10.0kb upstream 10.0kb upstream 10000 false Bd1: 52774679-52784678 Brachypodium distachyon
Bradi1g54210 10.0kb downstream 10.0kb downstream 14107 true Bd1: 52760572-52774678 Brachypodium distachyon
Bradi1g54210 10.0kb downstream 10.0kb downstream 10000 false Bd1: 52760572-52770571 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578254 5269 Grass View MSA
122044208 5273 Angiosperm View MSA
123429020 5275 Viridiplantae View MSA
121345613 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.729        
cufflinks 19.961     High  
cufflinks 47.258     High  
cufflinks 20.646     High  
cufflinks 23.287     High  
cufflinks 17.574     High  
cufflinks 25.447     High  
cufflinks 3.779       Low
cufflinks 7.992        
cufflinks 16.587     High  
cufflinks 26.856     High  
cufflinks 8.003        
cufflinks 22.606     High  
cufflinks 32.63     High  
cufflinks 3.547       Low
cufflinks 37.165     High  
cufflinks 8.997        
cufflinks 0.753       Low
cufflinks 35.831     High  
cufflinks 240.91     High High
cufflinks 4.028       Low
cufflinks 8.957        
cufflinks 4.772       Low
cufflinks 7.787        
cufflinks 16.94     High  
cufflinks 37.784     High  
cufflinks 22.831     High  
cufflinks 36.431     High  
cufflinks 20.267     High  
cufflinks 3.444       Low

0 Strain