Gene : Bradi1g54400 B. distachyon v3.1
Defline:  (1 of 2) PTHR22504 - REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1 Genomic Order:  6814
Name:  ? Bradi1g54400 Secondary Identifier:  ? PAC:32796437
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54400 0.5kb upstream 0.5kb upstream 4465 true Bd1: 52953887-52958351 Brachypodium distachyon
Bradi1g54400 0.5kb upstream 0.5kb upstream 500 false Bd1: 52953887-52954386 Brachypodium distachyon
Bradi1g54400 0.5kb downstream 0.5kb downstream 4465 true Bd1: 52954387-52958851 Brachypodium distachyon
Bradi1g54400 0.5kb downstream 0.5kb downstream 500 false Bd1: 52958352-52958851 Brachypodium distachyon
Bradi1g54400 1.0kb upstream 1.0kb upstream 4965 true Bd1: 52953387-52958351 Brachypodium distachyon
Bradi1g54400 1.0kb upstream 1.0kb upstream 1000 false Bd1: 52953387-52954386 Brachypodium distachyon
Bradi1g54400 1.0kb downstream 1.0kb downstream 4965 true Bd1: 52954387-52959351 Brachypodium distachyon
Bradi1g54400 1.0kb downstream 1.0kb downstream 1000 false Bd1: 52958352-52959351 Brachypodium distachyon
Bradi1g54400 2.0kb upstream 2.0kb upstream 5965 true Bd1: 52952387-52958351 Brachypodium distachyon
Bradi1g54400 2.0kb upstream 2.0kb upstream 2000 false Bd1: 52952387-52954386 Brachypodium distachyon
Bradi1g54400 2.0kb downstream 2.0kb downstream 5965 true Bd1: 52954387-52960351 Brachypodium distachyon
Bradi1g54400 2.0kb downstream 2.0kb downstream 2000 false Bd1: 52958352-52960351 Brachypodium distachyon
Bradi1g54400 5.0kb upstream 5.0kb upstream 8965 true Bd1: 52949387-52958351 Brachypodium distachyon
Bradi1g54400 5.0kb upstream 5.0kb upstream 5000 false Bd1: 52949387-52954386 Brachypodium distachyon
Bradi1g54400 5.0kb downstream 5.0kb downstream 8965 true Bd1: 52954387-52963351 Brachypodium distachyon
Bradi1g54400 5.0kb downstream 5.0kb downstream 5000 false Bd1: 52958352-52963351 Brachypodium distachyon
Bradi1g54400 10.0kb upstream 10.0kb upstream 13965 true Bd1: 52944387-52958351 Brachypodium distachyon
Bradi1g54400 10.0kb upstream 10.0kb upstream 10000 false Bd1: 52944387-52954386 Brachypodium distachyon
Bradi1g54400 10.0kb downstream 10.0kb downstream 13965 true Bd1: 52954387-52968351 Brachypodium distachyon
Bradi1g54400 10.0kb downstream 10.0kb downstream 10000 false Bd1: 52958352-52968351 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573497 5269 Grass View MSA
122047316 5273 Angiosperm View MSA
121345866 5274 Embryophyte View MSA
123424535 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.058       Low
cufflinks 5.424        
cufflinks 5.655        
cufflinks 5.673        
cufflinks 2.574       Low
cufflinks 5.441        
cufflinks 5.204        
cufflinks 2.281       Low
cufflinks 3.897        
cufflinks 4.377        
cufflinks 7.158       High
cufflinks 4.29        
cufflinks 6.836        
cufflinks 5.97        
cufflinks 2.074       Low
cufflinks 4.09        
cufflinks 4.148        
cufflinks 1.717       Low
cufflinks 3.97        
cufflinks 3.538        
cufflinks 4.482        
cufflinks 2.855        
cufflinks 2.357       Low
cufflinks 3.988        
cufflinks 5.7        
cufflinks 7.603       High
cufflinks 10.295     High High
cufflinks 6.192        
cufflinks 3.825        
cufflinks 3.889        

0 Strain