Gene : Bradi1g54570 B. distachyon v3.1
Defline:  (1 of 1) 2.8.4.5 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase / Methylthio-threonylcarbamoyl-adenosine transferase B Genomic Order:  6839
Name:  ? Bradi1g54570 Secondary Identifier:  ? PAC:32799646
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54570 0.5kb upstream 0.5kb upstream 4049 true Bd1: 53109764-53113812 Brachypodium distachyon
Bradi1g54570 0.5kb upstream 0.5kb upstream 500 false Bd1: 53113313-53113812 Brachypodium distachyon
Bradi1g54570 0.5kb downstream 0.5kb downstream 4049 true Bd1: 53109264-53113312 Brachypodium distachyon
Bradi1g54570 0.5kb downstream 0.5kb downstream 500 false Bd1: 53109264-53109763 Brachypodium distachyon
Bradi1g54570 1.0kb upstream 1.0kb upstream 4549 true Bd1: 53109764-53114312 Brachypodium distachyon
Bradi1g54570 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53113313-53114312 Brachypodium distachyon
Bradi1g54570 1.0kb downstream 1.0kb downstream 4549 true Bd1: 53108764-53113312 Brachypodium distachyon
Bradi1g54570 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53108764-53109763 Brachypodium distachyon
Bradi1g54570 2.0kb upstream 2.0kb upstream 5549 true Bd1: 53109764-53115312 Brachypodium distachyon
Bradi1g54570 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53113313-53115312 Brachypodium distachyon
Bradi1g54570 2.0kb downstream 2.0kb downstream 5549 true Bd1: 53107764-53113312 Brachypodium distachyon
Bradi1g54570 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53107764-53109763 Brachypodium distachyon
Bradi1g54570 5.0kb upstream 5.0kb upstream 8549 true Bd1: 53109764-53118312 Brachypodium distachyon
Bradi1g54570 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53113313-53118312 Brachypodium distachyon
Bradi1g54570 5.0kb downstream 5.0kb downstream 8549 true Bd1: 53104764-53113312 Brachypodium distachyon
Bradi1g54570 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53104764-53109763 Brachypodium distachyon
Bradi1g54570 10.0kb upstream 10.0kb upstream 13549 true Bd1: 53109764-53123312 Brachypodium distachyon
Bradi1g54570 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53113313-53123312 Brachypodium distachyon
Bradi1g54570 10.0kb downstream 10.0kb downstream 13549 true Bd1: 53099764-53113312 Brachypodium distachyon
Bradi1g54570 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53099764-53109763 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576915 5269 Grass View MSA
122047649 5273 Angiosperm View MSA
121350864 5274 Embryophyte View MSA
123427541 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.77        
cufflinks 3.379        
cufflinks 3.091        
cufflinks 3.232        
cufflinks 1.402       Low
cufflinks 3.109        
cufflinks 2.87        
cufflinks 2.794        
cufflinks 2.873        
cufflinks 1.976        
cufflinks 1.875        
cufflinks 2.285        
cufflinks 1.172       Low
cufflinks 1.477        
cufflinks 1.848        
cufflinks 3.117        
cufflinks 2.637        
cufflinks 3.921       High
cufflinks 1.68        
cufflinks 0.568       Low
cufflinks 2.349        
cufflinks 2.339        
cufflinks 2.49        
cufflinks 2.55        
cufflinks 3.369        
cufflinks 2.753        
cufflinks 1.535        
cufflinks 2.461        
cufflinks 2.42        
cufflinks 3.058        

0 Strain