Gene : Bradi1g49972 B. distachyon v3.1
Defline:  (1 of 4) KOG0884 - Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase Genomic Order:  6273
Name:  ? Bradi1g49972 Secondary Identifier:  ? PAC:32806545
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g49972 0.5kb upstream 0.5kb upstream 2861 true Bd1: 48802933-48805793 Brachypodium distachyon
Bradi1g49972 0.5kb upstream 0.5kb upstream 500 false Bd1: 48802933-48803432 Brachypodium distachyon
Bradi1g49972 0.5kb downstream 0.5kb downstream 2861 true Bd1: 48803433-48806293 Brachypodium distachyon
Bradi1g49972 0.5kb downstream 0.5kb downstream 500 false Bd1: 48805794-48806293 Brachypodium distachyon
Bradi1g49972 1.0kb upstream 1.0kb upstream 3361 true Bd1: 48802433-48805793 Brachypodium distachyon
Bradi1g49972 1.0kb upstream 1.0kb upstream 1000 false Bd1: 48802433-48803432 Brachypodium distachyon
Bradi1g49972 1.0kb downstream 1.0kb downstream 3361 true Bd1: 48803433-48806793 Brachypodium distachyon
Bradi1g49972 1.0kb downstream 1.0kb downstream 1000 false Bd1: 48805794-48806793 Brachypodium distachyon
Bradi1g49972 2.0kb upstream 2.0kb upstream 4361 true Bd1: 48801433-48805793 Brachypodium distachyon
Bradi1g49972 2.0kb upstream 2.0kb upstream 2000 false Bd1: 48801433-48803432 Brachypodium distachyon
Bradi1g49972 2.0kb downstream 2.0kb downstream 4361 true Bd1: 48803433-48807793 Brachypodium distachyon
Bradi1g49972 2.0kb downstream 2.0kb downstream 2000 false Bd1: 48805794-48807793 Brachypodium distachyon
Bradi1g49972 5.0kb upstream 5.0kb upstream 7361 true Bd1: 48798433-48805793 Brachypodium distachyon
Bradi1g49972 5.0kb upstream 5.0kb upstream 5000 false Bd1: 48798433-48803432 Brachypodium distachyon
Bradi1g49972 5.0kb downstream 5.0kb downstream 7361 true Bd1: 48803433-48810793 Brachypodium distachyon
Bradi1g49972 5.0kb downstream 5.0kb downstream 5000 false Bd1: 48805794-48810793 Brachypodium distachyon
Bradi1g49972 10.0kb upstream 10.0kb upstream 12361 true Bd1: 48793433-48805793 Brachypodium distachyon
Bradi1g49972 10.0kb upstream 10.0kb upstream 10000 false Bd1: 48793433-48803432 Brachypodium distachyon
Bradi1g49972 10.0kb downstream 10.0kb downstream 12361 true Bd1: 48803433-48815793 Brachypodium distachyon
Bradi1g49972 10.0kb downstream 10.0kb downstream 10000 false Bd1: 48805794-48815793 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572282 5269 Grass View MSA
122045315 5273 Angiosperm View MSA
121347403 5274 Embryophyte View MSA
123424024 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.599        
cufflinks 1.732        
cufflinks 3.098        
cufflinks 2.31        
cufflinks 2.234        
cufflinks 1.563        
cufflinks 1.972        
cufflinks 1.975        
cufflinks 1.511       Low
cufflinks 4.8       High
cufflinks 2.304        
cufflinks 1.244       Low
cufflinks 1.29       Low
cufflinks 1.679        
cufflinks 1.289       Low
cufflinks 1.429       Low
cufflinks 1.641        
cufflinks 2.413        
cufflinks 2.821        
cufflinks 2.175        
cufflinks 2.964        
cufflinks 2.898        
cufflinks 2.01        
cufflinks 1.722        
cufflinks 2.053        
cufflinks 3.565       High
cufflinks 1.93        
cufflinks 4.024       High
cufflinks 3.766       High
cufflinks 2.079        

0 Strain