Gene : Bradi1g50040 B. distachyon v3.1
Defline:  (1 of 1) K03428 - magnesium-protoporphyrin O-methyltransferase (E2.1.1.11, chlM, bchM) Genomic Order:  6280
Name:  ? Bradi1g50040 Secondary Identifier:  ? PAC:32797960
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CHLOROPHYLL-SYN Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g50040 0.5kb upstream 0.5kb upstream 1766 true Bd1: 48853238-48855003 Brachypodium distachyon
Bradi1g50040 0.5kb upstream 0.5kb upstream 500 false Bd1: 48853238-48853737 Brachypodium distachyon
Bradi1g50040 0.5kb downstream 0.5kb downstream 1766 true Bd1: 48853738-48855503 Brachypodium distachyon
Bradi1g50040 0.5kb downstream 0.5kb downstream 500 false Bd1: 48855004-48855503 Brachypodium distachyon
Bradi1g50040 1.0kb upstream 1.0kb upstream 2266 true Bd1: 48852738-48855003 Brachypodium distachyon
Bradi1g50040 1.0kb upstream 1.0kb upstream 1000 false Bd1: 48852738-48853737 Brachypodium distachyon
Bradi1g50040 1.0kb downstream 1.0kb downstream 2266 true Bd1: 48853738-48856003 Brachypodium distachyon
Bradi1g50040 1.0kb downstream 1.0kb downstream 1000 false Bd1: 48855004-48856003 Brachypodium distachyon
Bradi1g50040 2.0kb upstream 2.0kb upstream 3266 true Bd1: 48851738-48855003 Brachypodium distachyon
Bradi1g50040 2.0kb upstream 2.0kb upstream 2000 false Bd1: 48851738-48853737 Brachypodium distachyon
Bradi1g50040 2.0kb downstream 2.0kb downstream 3266 true Bd1: 48853738-48857003 Brachypodium distachyon
Bradi1g50040 2.0kb downstream 2.0kb downstream 2000 false Bd1: 48855004-48857003 Brachypodium distachyon
Bradi1g50040 5.0kb upstream 5.0kb upstream 6266 true Bd1: 48848738-48855003 Brachypodium distachyon
Bradi1g50040 5.0kb upstream 5.0kb upstream 5000 false Bd1: 48848738-48853737 Brachypodium distachyon
Bradi1g50040 5.0kb downstream 5.0kb downstream 6266 true Bd1: 48853738-48860003 Brachypodium distachyon
Bradi1g50040 5.0kb downstream 5.0kb downstream 5000 false Bd1: 48855004-48860003 Brachypodium distachyon
Bradi1g50040 10.0kb upstream 10.0kb upstream 11266 true Bd1: 48843738-48855003 Brachypodium distachyon
Bradi1g50040 10.0kb upstream 10.0kb upstream 10000 false Bd1: 48843738-48853737 Brachypodium distachyon
Bradi1g50040 10.0kb downstream 10.0kb downstream 11266 true Bd1: 48853738-48865003 Brachypodium distachyon
Bradi1g50040 10.0kb downstream 10.0kb downstream 10000 false Bd1: 48855004-48865003 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577084 5269 Grass View MSA
122043100 5273 Angiosperm View MSA
121345477 5274 Embryophyte View MSA
123424951 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.85     High  
cufflinks 39.566     High  
cufflinks 29.993     High  
cufflinks 42.965     High  
cufflinks 9.803     High  
cufflinks 37.512     High  
cufflinks 55.292     High High
cufflinks 36.698     High  
cufflinks 37.617     High  
cufflinks 34.057     High  
cufflinks 13.811     High  
cufflinks 17.435     High  
cufflinks 28.174     High  
cufflinks 30.681     High  
cufflinks 17.646     High  
cufflinks 33.409     High  
cufflinks 51.704     High  
cufflinks 2.099       Low
cufflinks 39.607     High  
cufflinks 2.512       Low
cufflinks 21.168     High  
cufflinks 19.521     High  
cufflinks 39.851     High  
cufflinks 47.11     High  
cufflinks 48.783     High  
cufflinks 24.019     High  
cufflinks 19.661     High  
cufflinks 32.937     High  
cufflinks 34.184     High  
cufflinks 16.916     High  

0 Strain