Gene : Bradi1g50550 B. distachyon v3.1
Defline:  (1 of 1) PTHR11404:SF8 - SUPEROXIDE DISMUTASE [FE] 1, CHLOROPLASTIC Genomic Order:  6347
Name:  ? Bradi1g50550 Secondary Identifier:  ? PAC:32802948
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon DETOX1-PWY Brachypodium distachyon pathologic  
Bdistachyon DETOX1-PWY-1 Brachypodium distachyon pathologic  
Bdistachyon PWY-6854 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g50550 0.5kb upstream 0.5kb upstream 3351 true Bd1: 49332256-49335606 Brachypodium distachyon
Bradi1g50550 0.5kb upstream 0.5kb upstream 500 false Bd1: 49335107-49335606 Brachypodium distachyon
Bradi1g50550 0.5kb downstream 0.5kb downstream 3351 true Bd1: 49331756-49335106 Brachypodium distachyon
Bradi1g50550 0.5kb downstream 0.5kb downstream 500 false Bd1: 49331756-49332255 Brachypodium distachyon
Bradi1g50550 1.0kb upstream 1.0kb upstream 3851 true Bd1: 49332256-49336106 Brachypodium distachyon
Bradi1g50550 1.0kb upstream 1.0kb upstream 1000 false Bd1: 49335107-49336106 Brachypodium distachyon
Bradi1g50550 1.0kb downstream 1.0kb downstream 3851 true Bd1: 49331256-49335106 Brachypodium distachyon
Bradi1g50550 1.0kb downstream 1.0kb downstream 1000 false Bd1: 49331256-49332255 Brachypodium distachyon
Bradi1g50550 2.0kb upstream 2.0kb upstream 4851 true Bd1: 49332256-49337106 Brachypodium distachyon
Bradi1g50550 2.0kb upstream 2.0kb upstream 2000 false Bd1: 49335107-49337106 Brachypodium distachyon
Bradi1g50550 2.0kb downstream 2.0kb downstream 4851 true Bd1: 49330256-49335106 Brachypodium distachyon
Bradi1g50550 2.0kb downstream 2.0kb downstream 2000 false Bd1: 49330256-49332255 Brachypodium distachyon
Bradi1g50550 5.0kb upstream 5.0kb upstream 7851 true Bd1: 49332256-49340106 Brachypodium distachyon
Bradi1g50550 5.0kb upstream 5.0kb upstream 5000 false Bd1: 49335107-49340106 Brachypodium distachyon
Bradi1g50550 5.0kb downstream 5.0kb downstream 7851 true Bd1: 49327256-49335106 Brachypodium distachyon
Bradi1g50550 5.0kb downstream 5.0kb downstream 5000 false Bd1: 49327256-49332255 Brachypodium distachyon
Bradi1g50550 10.0kb upstream 10.0kb upstream 12851 true Bd1: 49332256-49345106 Brachypodium distachyon
Bradi1g50550 10.0kb upstream 10.0kb upstream 10000 false Bd1: 49335107-49345106 Brachypodium distachyon
Bradi1g50550 10.0kb downstream 10.0kb downstream 12851 true Bd1: 49322256-49335106 Brachypodium distachyon
Bradi1g50550 10.0kb downstream 10.0kb downstream 10000 false Bd1: 49322256-49332255 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572177 5269 Grass View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.812     High  
cufflinks 33.829     High High
cufflinks 25.562     High  
cufflinks 31.872     High High
cufflinks 8.859        
cufflinks 27.123     High  
cufflinks 30.816     High High
cufflinks 19.201     High  
cufflinks 21.632     High  
cufflinks 18.652     High  
cufflinks 12.956     High  
cufflinks 20.636     High  
cufflinks 8.346     High Low
cufflinks 12.78     High  
cufflinks 11.776     High  
cufflinks 26.839     High  
cufflinks 23.83     High  
cufflinks 5.955       Low
cufflinks 15.011     High  
cufflinks 1.509       Low
cufflinks 12.759     High  
cufflinks 19.328     High  
cufflinks 15.571     High  
cufflinks 18.483     High  
cufflinks 27.721     High  
cufflinks 20.909     High  
cufflinks 7.584       Low
cufflinks 20.969     High  
cufflinks 20.713     High  
cufflinks 21.608     High  

0 Strain