Gene : Bradi1g50960 B. distachyon v3.1
Defline:  (1 of 3) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  6393
Name:  ? Bradi1g50960 Secondary Identifier:  ? PAC:32804001
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g50960 0.5kb upstream 0.5kb upstream 6902 true Bd1: 49548395-49555296 Brachypodium distachyon
Bradi1g50960 0.5kb upstream 0.5kb upstream 500 false Bd1: 49554797-49555296 Brachypodium distachyon
Bradi1g50960 0.5kb downstream 0.5kb downstream 6902 true Bd1: 49547895-49554796 Brachypodium distachyon
Bradi1g50960 0.5kb downstream 0.5kb downstream 500 false Bd1: 49547895-49548394 Brachypodium distachyon
Bradi1g50960 1.0kb upstream 1.0kb upstream 7402 true Bd1: 49548395-49555796 Brachypodium distachyon
Bradi1g50960 1.0kb upstream 1.0kb upstream 1000 false Bd1: 49554797-49555796 Brachypodium distachyon
Bradi1g50960 1.0kb downstream 1.0kb downstream 7402 true Bd1: 49547395-49554796 Brachypodium distachyon
Bradi1g50960 1.0kb downstream 1.0kb downstream 1000 false Bd1: 49547395-49548394 Brachypodium distachyon
Bradi1g50960 2.0kb upstream 2.0kb upstream 8402 true Bd1: 49548395-49556796 Brachypodium distachyon
Bradi1g50960 2.0kb upstream 2.0kb upstream 2000 false Bd1: 49554797-49556796 Brachypodium distachyon
Bradi1g50960 2.0kb downstream 2.0kb downstream 8402 true Bd1: 49546395-49554796 Brachypodium distachyon
Bradi1g50960 2.0kb downstream 2.0kb downstream 2000 false Bd1: 49546395-49548394 Brachypodium distachyon
Bradi1g50960 5.0kb upstream 5.0kb upstream 11402 true Bd1: 49548395-49559796 Brachypodium distachyon
Bradi1g50960 5.0kb upstream 5.0kb upstream 5000 false Bd1: 49554797-49559796 Brachypodium distachyon
Bradi1g50960 5.0kb downstream 5.0kb downstream 11402 true Bd1: 49543395-49554796 Brachypodium distachyon
Bradi1g50960 5.0kb downstream 5.0kb downstream 5000 false Bd1: 49543395-49548394 Brachypodium distachyon
Bradi1g50960 10.0kb upstream 10.0kb upstream 16402 true Bd1: 49548395-49564796 Brachypodium distachyon
Bradi1g50960 10.0kb upstream 10.0kb upstream 10000 false Bd1: 49554797-49564796 Brachypodium distachyon
Bradi1g50960 10.0kb downstream 10.0kb downstream 16402 true Bd1: 49538395-49554796 Brachypodium distachyon
Bradi1g50960 10.0kb downstream 10.0kb downstream 10000 false Bd1: 49538395-49548394 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586788 5269 Grass View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.13        
cufflinks 0.146        
cufflinks 0.163       High
cufflinks 0.102        
cufflinks 0.076     Low  
cufflinks 0.109        
cufflinks 0.157        
cufflinks 0.122        
cufflinks 0.111        
cufflinks 0.101     Low  
cufflinks 0.109        
cufflinks 0.091        
cufflinks 0.061       Low
cufflinks 0.128        
cufflinks 0.036     Low Low
cufflinks 0.133        
cufflinks 0.146     Low  
cufflinks 0.146        
cufflinks 0.208       High
cufflinks 0.05     Low Low
cufflinks 0.089     Low  
cufflinks 0.149        
cufflinks 0.117        
cufflinks 0.104     Low  
cufflinks 0.093     Low  
cufflinks 0.132        
cufflinks 0.098        
cufflinks 0.136        
cufflinks 0.123        
cufflinks 0.103     Low  

0 Strain