Gene : Bradi1g51140 B. distachyon v3.1
Defline:  (1 of 1) PTHR11404//PTHR11404:SF17 - SUPEROXIDE DISMUTASE 2 // SUPEROXIDE DISMUTASE [FE] 3, CHLOROPLASTIC Genomic Order:  6419
Name:  ? Bradi1g51140 Secondary Identifier:  ? PAC:32795046
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon DETOX1-PWY Brachypodium distachyon pathologic  
Bdistachyon DETOX1-PWY-1 Brachypodium distachyon pathologic  
Bdistachyon PWY-6854 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g51140 0.5kb upstream 0.5kb upstream 3215 true Bd1: 49732355-49735569 Brachypodium distachyon
Bradi1g51140 0.5kb upstream 0.5kb upstream 500 false Bd1: 49732355-49732854 Brachypodium distachyon
Bradi1g51140 0.5kb downstream 0.5kb downstream 3215 true Bd1: 49732855-49736069 Brachypodium distachyon
Bradi1g51140 0.5kb downstream 0.5kb downstream 500 false Bd1: 49735570-49736069 Brachypodium distachyon
Bradi1g51140 1.0kb upstream 1.0kb upstream 3715 true Bd1: 49731855-49735569 Brachypodium distachyon
Bradi1g51140 1.0kb upstream 1.0kb upstream 1000 false Bd1: 49731855-49732854 Brachypodium distachyon
Bradi1g51140 1.0kb downstream 1.0kb downstream 3715 true Bd1: 49732855-49736569 Brachypodium distachyon
Bradi1g51140 1.0kb downstream 1.0kb downstream 1000 false Bd1: 49735570-49736569 Brachypodium distachyon
Bradi1g51140 2.0kb upstream 2.0kb upstream 4715 true Bd1: 49730855-49735569 Brachypodium distachyon
Bradi1g51140 2.0kb upstream 2.0kb upstream 2000 false Bd1: 49730855-49732854 Brachypodium distachyon
Bradi1g51140 2.0kb downstream 2.0kb downstream 4715 true Bd1: 49732855-49737569 Brachypodium distachyon
Bradi1g51140 2.0kb downstream 2.0kb downstream 2000 false Bd1: 49735570-49737569 Brachypodium distachyon
Bradi1g51140 5.0kb upstream 5.0kb upstream 7715 true Bd1: 49727855-49735569 Brachypodium distachyon
Bradi1g51140 5.0kb upstream 5.0kb upstream 5000 false Bd1: 49727855-49732854 Brachypodium distachyon
Bradi1g51140 5.0kb downstream 5.0kb downstream 7715 true Bd1: 49732855-49740569 Brachypodium distachyon
Bradi1g51140 5.0kb downstream 5.0kb downstream 5000 false Bd1: 49735570-49740569 Brachypodium distachyon
Bradi1g51140 10.0kb upstream 10.0kb upstream 12715 true Bd1: 49722855-49735569 Brachypodium distachyon
Bradi1g51140 10.0kb upstream 10.0kb upstream 10000 false Bd1: 49722855-49732854 Brachypodium distachyon
Bradi1g51140 10.0kb downstream 10.0kb downstream 12715 true Bd1: 49732855-49745569 Brachypodium distachyon
Bradi1g51140 10.0kb downstream 10.0kb downstream 10000 false Bd1: 49735570-49745569 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569042 5269 Grass View MSA
122044976 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.156     High  
cufflinks 27.047     High  
cufflinks 23.238     High  
cufflinks 27.858     High  
cufflinks 8.096        
cufflinks 20.044     High  
cufflinks 24.506     High  
cufflinks 19.419     High  
cufflinks 18.07     High  
cufflinks 17.554     High  
cufflinks 27.937     High  
cufflinks 17.392     High  
cufflinks 11.718     High  
cufflinks 22.327     High  
cufflinks 11.932     High  
cufflinks 25.505     High  
cufflinks 18.342     High  
cufflinks 5.48       Low
cufflinks 11.783        
cufflinks 3.17       Low
cufflinks 10.397        
cufflinks 18.056     High  
cufflinks 16.809     High  
cufflinks 17.36     High  
cufflinks 21.846     High  
cufflinks 23.928     High  
cufflinks 16.382     High  
cufflinks 20.856     High  
cufflinks 18.87     High  
cufflinks 15.143     High  

0 Strain