Gene : Bradi5g14120 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742//PTHR10742:SF229 - AMINE OXIDASE // PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1568
Name:  ? Bradi5g14120 Secondary Identifier:  ? PAC:32811609
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CHLOROPHYLL-SYN Brachypodium distachyon pathologic  
Bdistachyon HEME-BIOSYNTHESIS-II Brachypodium distachyon pathologic  
Bdistachyon PWY-5918 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g14120 0.5kb upstream 0.5kb upstream 9766 true Bd5: 17706620-17716385 Brachypodium distachyon
Bradi5g14120 0.5kb upstream 0.5kb upstream 500 false Bd5: 17706620-17707119 Brachypodium distachyon
Bradi5g14120 0.5kb downstream 0.5kb downstream 9766 true Bd5: 17707120-17716885 Brachypodium distachyon
Bradi5g14120 0.5kb downstream 0.5kb downstream 500 false Bd5: 17716386-17716885 Brachypodium distachyon
Bradi5g14120 1.0kb upstream 1.0kb upstream 10266 true Bd5: 17706120-17716385 Brachypodium distachyon
Bradi5g14120 1.0kb upstream 1.0kb upstream 1000 false Bd5: 17706120-17707119 Brachypodium distachyon
Bradi5g14120 1.0kb downstream 1.0kb downstream 10266 true Bd5: 17707120-17717385 Brachypodium distachyon
Bradi5g14120 1.0kb downstream 1.0kb downstream 1000 false Bd5: 17716386-17717385 Brachypodium distachyon
Bradi5g14120 2.0kb upstream 2.0kb upstream 11266 true Bd5: 17705120-17716385 Brachypodium distachyon
Bradi5g14120 2.0kb upstream 2.0kb upstream 2000 false Bd5: 17705120-17707119 Brachypodium distachyon
Bradi5g14120 2.0kb downstream 2.0kb downstream 11266 true Bd5: 17707120-17718385 Brachypodium distachyon
Bradi5g14120 2.0kb downstream 2.0kb downstream 2000 false Bd5: 17716386-17718385 Brachypodium distachyon
Bradi5g14120 5.0kb upstream 5.0kb upstream 14266 true Bd5: 17702120-17716385 Brachypodium distachyon
Bradi5g14120 5.0kb upstream 5.0kb upstream 5000 false Bd5: 17702120-17707119 Brachypodium distachyon
Bradi5g14120 5.0kb downstream 5.0kb downstream 14266 true Bd5: 17707120-17721385 Brachypodium distachyon
Bradi5g14120 5.0kb downstream 5.0kb downstream 5000 false Bd5: 17716386-17721385 Brachypodium distachyon
Bradi5g14120 10.0kb upstream 10.0kb upstream 19266 true Bd5: 17697120-17716385 Brachypodium distachyon
Bradi5g14120 10.0kb upstream 10.0kb upstream 10000 false Bd5: 17697120-17707119 Brachypodium distachyon
Bradi5g14120 10.0kb downstream 10.0kb downstream 19266 true Bd5: 17707120-17726385 Brachypodium distachyon
Bradi5g14120 10.0kb downstream 10.0kb downstream 10000 false Bd5: 17716386-17726385 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571496 5269 Grass View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.331       Low
cufflinks 2.344        
cufflinks 2.129        
cufflinks 2.072        
cufflinks 1.646        
cufflinks 1.96        
cufflinks 1.995        
cufflinks 1.405       Low
cufflinks 1.76        
cufflinks 2.372        
cufflinks 1.911        
cufflinks 1.739        
cufflinks 1.402       Low
cufflinks 1.42       Low
cufflinks 1.489       Low
cufflinks 2.082        
cufflinks 2.033        
cufflinks 2.262        
cufflinks 3.811       High
cufflinks 1.677        
cufflinks 1.601        
cufflinks 2.269        
cufflinks 1.378       Low
cufflinks 1.546        
cufflinks 1.868        
cufflinks 2.356        
cufflinks 1.907        
cufflinks 2.368        
cufflinks 2.174        
cufflinks 1.929        

0 Strain