Gene : Bradi5g13967 B. distachyon v3.1
Defline:  (1 of 1) PTHR10535//PTHR10535:SF4 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Genomic Order:  1547
Name:  ? Bradi5g13967 Secondary Identifier:  ? PAC:32810371
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g13967 0.5kb upstream 0.5kb upstream 3353 true Bd5: 17552130-17555482 Brachypodium distachyon
Bradi5g13967 0.5kb upstream 0.5kb upstream 500 false Bd5: 17554983-17555482 Brachypodium distachyon
Bradi5g13967 0.5kb downstream 0.5kb downstream 3353 true Bd5: 17551630-17554982 Brachypodium distachyon
Bradi5g13967 0.5kb downstream 0.5kb downstream 500 false Bd5: 17551630-17552129 Brachypodium distachyon
Bradi5g13967 1.0kb upstream 1.0kb upstream 3853 true Bd5: 17552130-17555982 Brachypodium distachyon
Bradi5g13967 1.0kb upstream 1.0kb upstream 1000 false Bd5: 17554983-17555982 Brachypodium distachyon
Bradi5g13967 1.0kb downstream 1.0kb downstream 3853 true Bd5: 17551130-17554982 Brachypodium distachyon
Bradi5g13967 1.0kb downstream 1.0kb downstream 1000 false Bd5: 17551130-17552129 Brachypodium distachyon
Bradi5g13967 2.0kb upstream 2.0kb upstream 4853 true Bd5: 17552130-17556982 Brachypodium distachyon
Bradi5g13967 2.0kb upstream 2.0kb upstream 2000 false Bd5: 17554983-17556982 Brachypodium distachyon
Bradi5g13967 2.0kb downstream 2.0kb downstream 4853 true Bd5: 17550130-17554982 Brachypodium distachyon
Bradi5g13967 2.0kb downstream 2.0kb downstream 2000 false Bd5: 17550130-17552129 Brachypodium distachyon
Bradi5g13967 5.0kb upstream 5.0kb upstream 7853 true Bd5: 17552130-17559982 Brachypodium distachyon
Bradi5g13967 5.0kb upstream 5.0kb upstream 5000 false Bd5: 17554983-17559982 Brachypodium distachyon
Bradi5g13967 5.0kb downstream 5.0kb downstream 7853 true Bd5: 17547130-17554982 Brachypodium distachyon
Bradi5g13967 5.0kb downstream 5.0kb downstream 5000 false Bd5: 17547130-17552129 Brachypodium distachyon
Bradi5g13967 10.0kb upstream 10.0kb upstream 12853 true Bd5: 17552130-17564982 Brachypodium distachyon
Bradi5g13967 10.0kb upstream 10.0kb upstream 10000 false Bd5: 17554983-17564982 Brachypodium distachyon
Bradi5g13967 10.0kb downstream 10.0kb downstream 12853 true Bd5: 17542130-17554982 Brachypodium distachyon
Bradi5g13967 10.0kb downstream 10.0kb downstream 10000 false Bd5: 17542130-17552129 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579078 5269 Grass View MSA
122044572 5273 Angiosperm View MSA
121347059 5274 Embryophyte View MSA
123424632 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.803        
cufflinks 6.007        
cufflinks 4.794        
cufflinks 6.446        
cufflinks 3.728        
cufflinks 5.099        
cufflinks 6.264        
cufflinks 4.722        
cufflinks 5.563        
cufflinks 4.54        
cufflinks 2.681       Low
cufflinks 3.346        
cufflinks 1.808       Low
cufflinks 2.613       Low
cufflinks 2.685       Low
cufflinks 4.033        
cufflinks 5.413        
cufflinks 6.422        
cufflinks 3.943        
cufflinks 2.693       Low
cufflinks 6.959       High
cufflinks 3.925        
cufflinks 4.681        
cufflinks 4.462        
cufflinks 7.336       High
cufflinks 4.41        
cufflinks 2.965       Low
cufflinks 4.332        
cufflinks 4.009        
cufflinks 6.121        

0 Strain