Gene : Bradi1g54890 B. distachyon v3.1
Defline:  (1 of 2) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  6875
Name:  ? Bradi1g54890 Secondary Identifier:  ? PAC:32793352
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7560 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54890 0.5kb upstream 0.5kb upstream 3662 true Bd1: 53424733-53428394 Brachypodium distachyon
Bradi1g54890 0.5kb upstream 0.5kb upstream 500 false Bd1: 53427895-53428394 Brachypodium distachyon
Bradi1g54890 0.5kb downstream 0.5kb downstream 3662 true Bd1: 53424233-53427894 Brachypodium distachyon
Bradi1g54890 0.5kb downstream 0.5kb downstream 500 false Bd1: 53424233-53424732 Brachypodium distachyon
Bradi1g54890 1.0kb upstream 1.0kb upstream 4162 true Bd1: 53424733-53428894 Brachypodium distachyon
Bradi1g54890 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53427895-53428894 Brachypodium distachyon
Bradi1g54890 1.0kb downstream 1.0kb downstream 4162 true Bd1: 53423733-53427894 Brachypodium distachyon
Bradi1g54890 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53423733-53424732 Brachypodium distachyon
Bradi1g54890 2.0kb upstream 2.0kb upstream 5162 true Bd1: 53424733-53429894 Brachypodium distachyon
Bradi1g54890 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53427895-53429894 Brachypodium distachyon
Bradi1g54890 2.0kb downstream 2.0kb downstream 5162 true Bd1: 53422733-53427894 Brachypodium distachyon
Bradi1g54890 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53422733-53424732 Brachypodium distachyon
Bradi1g54890 5.0kb upstream 5.0kb upstream 8162 true Bd1: 53424733-53432894 Brachypodium distachyon
Bradi1g54890 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53427895-53432894 Brachypodium distachyon
Bradi1g54890 5.0kb downstream 5.0kb downstream 8162 true Bd1: 53419733-53427894 Brachypodium distachyon
Bradi1g54890 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53419733-53424732 Brachypodium distachyon
Bradi1g54890 10.0kb upstream 10.0kb upstream 13162 true Bd1: 53424733-53437894 Brachypodium distachyon
Bradi1g54890 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53427895-53437894 Brachypodium distachyon
Bradi1g54890 10.0kb downstream 10.0kb downstream 13162 true Bd1: 53414733-53427894 Brachypodium distachyon
Bradi1g54890 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53414733-53424732 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583726 5269 Grass View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.786        
cufflinks 0.007     Low Low
cufflinks 0.01     Low Low
cufflinks 0.005     Low Low
cufflinks 22.815     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.166        
cufflinks 0.032     Low  
cufflinks 0.021     Low  
cufflinks 0.026     Low  
cufflinks 0.129        
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.584        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.177        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.084     Low  
cufflinks 22.699     High High
cufflinks 0.055     Low  
cufflinks 0.084     Low  
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low  
cufflinks 0.024     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.608        

0 Strain