Gene : Bradi1g54970 B. distachyon v3.1
Defline:  (1 of 1) PTHR10516:SF323 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-4, CHLOROPLASTIC Genomic Order:  6885
Name:  ? Bradi1g54970 Secondary Identifier:  ? PAC:32802969
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54970 0.5kb upstream 0.5kb upstream 3111 true Bd1: 53524343-53527453 Brachypodium distachyon
Bradi1g54970 0.5kb upstream 0.5kb upstream 500 false Bd1: 53526954-53527453 Brachypodium distachyon
Bradi1g54970 0.5kb downstream 0.5kb downstream 3111 true Bd1: 53523843-53526953 Brachypodium distachyon
Bradi1g54970 0.5kb downstream 0.5kb downstream 500 false Bd1: 53523843-53524342 Brachypodium distachyon
Bradi1g54970 1.0kb upstream 1.0kb upstream 3611 true Bd1: 53524343-53527953 Brachypodium distachyon
Bradi1g54970 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53526954-53527953 Brachypodium distachyon
Bradi1g54970 1.0kb downstream 1.0kb downstream 3611 true Bd1: 53523343-53526953 Brachypodium distachyon
Bradi1g54970 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53523343-53524342 Brachypodium distachyon
Bradi1g54970 2.0kb upstream 2.0kb upstream 4611 true Bd1: 53524343-53528953 Brachypodium distachyon
Bradi1g54970 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53526954-53528953 Brachypodium distachyon
Bradi1g54970 2.0kb downstream 2.0kb downstream 4611 true Bd1: 53522343-53526953 Brachypodium distachyon
Bradi1g54970 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53522343-53524342 Brachypodium distachyon
Bradi1g54970 5.0kb upstream 5.0kb upstream 7611 true Bd1: 53524343-53531953 Brachypodium distachyon
Bradi1g54970 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53526954-53531953 Brachypodium distachyon
Bradi1g54970 5.0kb downstream 5.0kb downstream 7611 true Bd1: 53519343-53526953 Brachypodium distachyon
Bradi1g54970 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53519343-53524342 Brachypodium distachyon
Bradi1g54970 10.0kb upstream 10.0kb upstream 12611 true Bd1: 53524343-53536953 Brachypodium distachyon
Bradi1g54970 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53526954-53536953 Brachypodium distachyon
Bradi1g54970 10.0kb downstream 10.0kb downstream 12611 true Bd1: 53514343-53526953 Brachypodium distachyon
Bradi1g54970 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53514343-53524342 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582181 5269 Grass View MSA
122047371 5273 Angiosperm View MSA
121347263 5274 Embryophyte View MSA
123426566 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.237     High  
cufflinks 43.152     High  
cufflinks 29.548     High  
cufflinks 55.259     High High
cufflinks 21.751     High  
cufflinks 22.075     High  
cufflinks 36.634     High  
cufflinks 8.623        
cufflinks 11.197     High  
cufflinks 21.684     High  
cufflinks 26.759     High  
cufflinks 15.423     High  
cufflinks 22.855     High  
cufflinks 30.12     High  
cufflinks 21.624     High  
cufflinks 22.955     High  
cufflinks 21.332     High  
cufflinks 0.645       Low
cufflinks 12.122        
cufflinks 13.221     High  
cufflinks 7.41        
cufflinks 16.553     High  
cufflinks 10.18     High  
cufflinks 13.596     High  
cufflinks 27.44     High  
cufflinks 31.967     High  
cufflinks 28.323     High  
cufflinks 31.624     High  
cufflinks 25.902     High  
cufflinks 7.564        

0 Strain