Gene : Bradi1g54900 B. distachyon v3.1
Defline:  (1 of 1) K04485 - DNA repair protein RadA/Sms (sms, radA) Genomic Order:  6876
Name:  ? Bradi1g54900 Secondary Identifier:  ? PAC:32806610
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g54900 0.5kb upstream 0.5kb upstream 14816 true Bd1: 53460433-53475248 Brachypodium distachyon
Bradi1g54900 0.5kb upstream 0.5kb upstream 500 false Bd1: 53474749-53475248 Brachypodium distachyon
Bradi1g54900 0.5kb downstream 0.5kb downstream 14816 true Bd1: 53459933-53474748 Brachypodium distachyon
Bradi1g54900 0.5kb downstream 0.5kb downstream 500 false Bd1: 53459933-53460432 Brachypodium distachyon
Bradi1g54900 1.0kb upstream 1.0kb upstream 15316 true Bd1: 53460433-53475748 Brachypodium distachyon
Bradi1g54900 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53474749-53475748 Brachypodium distachyon
Bradi1g54900 1.0kb downstream 1.0kb downstream 15316 true Bd1: 53459433-53474748 Brachypodium distachyon
Bradi1g54900 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53459433-53460432 Brachypodium distachyon
Bradi1g54900 2.0kb upstream 2.0kb upstream 16316 true Bd1: 53460433-53476748 Brachypodium distachyon
Bradi1g54900 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53474749-53476748 Brachypodium distachyon
Bradi1g54900 2.0kb downstream 2.0kb downstream 16316 true Bd1: 53458433-53474748 Brachypodium distachyon
Bradi1g54900 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53458433-53460432 Brachypodium distachyon
Bradi1g54900 5.0kb upstream 5.0kb upstream 19316 true Bd1: 53460433-53479748 Brachypodium distachyon
Bradi1g54900 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53474749-53479748 Brachypodium distachyon
Bradi1g54900 5.0kb downstream 5.0kb downstream 19316 true Bd1: 53455433-53474748 Brachypodium distachyon
Bradi1g54900 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53455433-53460432 Brachypodium distachyon
Bradi1g54900 10.0kb upstream 10.0kb upstream 24316 true Bd1: 53460433-53484748 Brachypodium distachyon
Bradi1g54900 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53474749-53484748 Brachypodium distachyon
Bradi1g54900 10.0kb downstream 10.0kb downstream 24316 true Bd1: 53450433-53474748 Brachypodium distachyon
Bradi1g54900 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53450433-53460432 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577422 5269 Grass View MSA
122043621 5273 Angiosperm View MSA
121346798 5274 Embryophyte View MSA
123426216 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.08     Low  
cufflinks 0.15        
cufflinks 0.144        
cufflinks 0.15        
cufflinks 0.051     Low Low
cufflinks 0.112        
cufflinks 0.137        
cufflinks 0.07     Low  
cufflinks 0.124        
cufflinks 0.063     Low  
cufflinks 0.117        
cufflinks 0.076     Low  
cufflinks 0.067        
cufflinks 0.069        
cufflinks 0.042     Low Low
cufflinks 0.125        
cufflinks 0.061     Low  
cufflinks 0.185       High
cufflinks 0.094     Low  
cufflinks 0.079     Low  
cufflinks 0.122        
cufflinks 0.082     Low  
cufflinks 0.073     Low  
cufflinks 0.089     Low  
cufflinks 0.13        
cufflinks 0.085     Low  
cufflinks 0.108        
cufflinks 0.075     Low  
cufflinks 0.083     Low  
cufflinks 0.123     Low  

0 Strain