Gene : Bradi1g55090 B. distachyon v3.1
Defline:  (1 of 2) PTHR12505//PTHR12505:SF26 - PHD FINGER TRANSCRIPTION FACTOR // SUBFAMILY NOT NAMED Genomic Order:  6900
Name:  ? Bradi1g55090 Secondary Identifier:  ? PAC:32800884
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g55090 0.5kb upstream 0.5kb upstream 8222 true Bd1: 53661614-53669835 Brachypodium distachyon
Bradi1g55090 0.5kb upstream 0.5kb upstream 500 false Bd1: 53669336-53669835 Brachypodium distachyon
Bradi1g55090 0.5kb downstream 0.5kb downstream 8222 true Bd1: 53661114-53669335 Brachypodium distachyon
Bradi1g55090 0.5kb downstream 0.5kb downstream 500 false Bd1: 53661114-53661613 Brachypodium distachyon
Bradi1g55090 1.0kb upstream 1.0kb upstream 8722 true Bd1: 53661614-53670335 Brachypodium distachyon
Bradi1g55090 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53669336-53670335 Brachypodium distachyon
Bradi1g55090 1.0kb downstream 1.0kb downstream 8722 true Bd1: 53660614-53669335 Brachypodium distachyon
Bradi1g55090 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53660614-53661613 Brachypodium distachyon
Bradi1g55090 2.0kb upstream 2.0kb upstream 9722 true Bd1: 53661614-53671335 Brachypodium distachyon
Bradi1g55090 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53669336-53671335 Brachypodium distachyon
Bradi1g55090 2.0kb downstream 2.0kb downstream 9722 true Bd1: 53659614-53669335 Brachypodium distachyon
Bradi1g55090 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53659614-53661613 Brachypodium distachyon
Bradi1g55090 5.0kb upstream 5.0kb upstream 12722 true Bd1: 53661614-53674335 Brachypodium distachyon
Bradi1g55090 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53669336-53674335 Brachypodium distachyon
Bradi1g55090 5.0kb downstream 5.0kb downstream 12722 true Bd1: 53656614-53669335 Brachypodium distachyon
Bradi1g55090 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53656614-53661613 Brachypodium distachyon
Bradi1g55090 10.0kb upstream 10.0kb upstream 17722 true Bd1: 53661614-53679335 Brachypodium distachyon
Bradi1g55090 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53669336-53679335 Brachypodium distachyon
Bradi1g55090 10.0kb downstream 10.0kb downstream 17722 true Bd1: 53651614-53669335 Brachypodium distachyon
Bradi1g55090 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53651614-53661613 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026727 5273 Angiosperm View MSA
124572719 5269 Grass View MSA
121296509 5274 Embryophyte View MSA
123426883 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.787        
cufflinks 6.03        
cufflinks 6.036        
cufflinks 7.554        
cufflinks 23.406     High High
cufflinks 6.038        
cufflinks 5.876        
cufflinks 7.276        
cufflinks 6.139        
cufflinks 7.702        
cufflinks 4.344       Low
cufflinks 6.867        
cufflinks 4.01       Low
cufflinks 3.845       Low
cufflinks 9.108     High  
cufflinks 5.25        
cufflinks 8.886        
cufflinks 7.215        
cufflinks 6.762        
cufflinks 20.731     High High
cufflinks 7.126        
cufflinks 5.886        
cufflinks 7.711        
cufflinks 6.268        
cufflinks 7.327        
cufflinks 6.701        
cufflinks 4.279       Low
cufflinks 6.785        
cufflinks 6.542        
cufflinks 8.405        

0 Strain