Gene : Bradi1g55300 B. distachyon v3.1
Defline:  (1 of 1) PTHR12526:SF2 - SUCROSE-PHOSPHATASE 1-RELATED Genomic Order:  6925
Name:  ? Bradi1g55300 Secondary Identifier:  ? PAC:32793079
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7238 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g55300 0.5kb upstream 0.5kb upstream 4981 true Bd1: 53917549-53922529 Brachypodium distachyon
Bradi1g55300 0.5kb upstream 0.5kb upstream 500 false Bd1: 53922030-53922529 Brachypodium distachyon
Bradi1g55300 0.5kb downstream 0.5kb downstream 4981 true Bd1: 53917049-53922029 Brachypodium distachyon
Bradi1g55300 0.5kb downstream 0.5kb downstream 500 false Bd1: 53917049-53917548 Brachypodium distachyon
Bradi1g55300 1.0kb upstream 1.0kb upstream 5481 true Bd1: 53917549-53923029 Brachypodium distachyon
Bradi1g55300 1.0kb upstream 1.0kb upstream 1000 false Bd1: 53922030-53923029 Brachypodium distachyon
Bradi1g55300 1.0kb downstream 1.0kb downstream 5481 true Bd1: 53916549-53922029 Brachypodium distachyon
Bradi1g55300 1.0kb downstream 1.0kb downstream 1000 false Bd1: 53916549-53917548 Brachypodium distachyon
Bradi1g55300 2.0kb upstream 2.0kb upstream 6481 true Bd1: 53917549-53924029 Brachypodium distachyon
Bradi1g55300 2.0kb upstream 2.0kb upstream 2000 false Bd1: 53922030-53924029 Brachypodium distachyon
Bradi1g55300 2.0kb downstream 2.0kb downstream 6481 true Bd1: 53915549-53922029 Brachypodium distachyon
Bradi1g55300 2.0kb downstream 2.0kb downstream 2000 false Bd1: 53915549-53917548 Brachypodium distachyon
Bradi1g55300 5.0kb upstream 5.0kb upstream 9481 true Bd1: 53917549-53927029 Brachypodium distachyon
Bradi1g55300 5.0kb upstream 5.0kb upstream 5000 false Bd1: 53922030-53927029 Brachypodium distachyon
Bradi1g55300 5.0kb downstream 5.0kb downstream 9481 true Bd1: 53912549-53922029 Brachypodium distachyon
Bradi1g55300 5.0kb downstream 5.0kb downstream 5000 false Bd1: 53912549-53917548 Brachypodium distachyon
Bradi1g55300 10.0kb upstream 10.0kb upstream 14481 true Bd1: 53917549-53932029 Brachypodium distachyon
Bradi1g55300 10.0kb upstream 10.0kb upstream 10000 false Bd1: 53922030-53932029 Brachypodium distachyon
Bradi1g55300 10.0kb downstream 10.0kb downstream 14481 true Bd1: 53907549-53922029 Brachypodium distachyon
Bradi1g55300 10.0kb downstream 10.0kb downstream 10000 false Bd1: 53907549-53917548 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124591146 5269 Grass View MSA
122041652 5273 Angiosperm View MSA
123428930 5275 Viridiplantae View MSA
121349182 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.793     High  
cufflinks 27.92     High  
cufflinks 32.162     High  
cufflinks 35.48     High  
cufflinks 28.601     High  
cufflinks 24.394     High  
cufflinks 22.902     High  
cufflinks 32.433     High  
cufflinks 26.297     High  
cufflinks 19.732     High Low
cufflinks 39.046     High High
cufflinks 31.548     High  
cufflinks 35.088     High  
cufflinks 40.535     High High
cufflinks 44.655     High High
cufflinks 27.991     High  
cufflinks 28.203     High  
cufflinks 17.158     High Low
cufflinks 14.277     High Low
cufflinks 22.118     High  
cufflinks 24.668     High  
cufflinks 26.709     High  
cufflinks 32.385     High  
cufflinks 30.799     High  
cufflinks 23.167     High  
cufflinks 32.382     High  
cufflinks 38.88     High High
cufflinks 30.885     High  
cufflinks 29.748     High  
cufflinks 21.815     High  

0 Strain