Gene : Bradi1g55420 B. distachyon v3.1
Defline:  (1 of 2) K10808 - ribonucleoside-diphosphate reductase subunit M2 (RRM2) Genomic Order:  6941
Name:  ? Bradi1g55420 Secondary Identifier:  ? PAC:32794081
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7184 Brachypodium distachyon pathologic  
Bdistachyon PWY-7210 Brachypodium distachyon pathologic  
Bdistachyon PWY-7211 Brachypodium distachyon pathologic  
Bdistachyon PWY-7226 Brachypodium distachyon pathologic  
Bdistachyon PWY-7227 Brachypodium distachyon pathologic  
Bdistachyon PWY-7228 Brachypodium distachyon pathologic  
Bdistachyon PWY-7229 Brachypodium distachyon pathologic  
Bdistachyon PWY-841 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g55420 0.5kb upstream 0.5kb upstream 2176 true Bd1: 54059432-54061607 Brachypodium distachyon
Bradi1g55420 0.5kb upstream 0.5kb upstream 500 false Bd1: 54061108-54061607 Brachypodium distachyon
Bradi1g55420 0.5kb downstream 0.5kb downstream 2176 true Bd1: 54058932-54061107 Brachypodium distachyon
Bradi1g55420 0.5kb downstream 0.5kb downstream 500 false Bd1: 54058932-54059431 Brachypodium distachyon
Bradi1g55420 1.0kb upstream 1.0kb upstream 2676 true Bd1: 54059432-54062107 Brachypodium distachyon
Bradi1g55420 1.0kb upstream 1.0kb upstream 1000 false Bd1: 54061108-54062107 Brachypodium distachyon
Bradi1g55420 1.0kb downstream 1.0kb downstream 2676 true Bd1: 54058432-54061107 Brachypodium distachyon
Bradi1g55420 1.0kb downstream 1.0kb downstream 1000 false Bd1: 54058432-54059431 Brachypodium distachyon
Bradi1g55420 2.0kb upstream 2.0kb upstream 3676 true Bd1: 54059432-54063107 Brachypodium distachyon
Bradi1g55420 2.0kb upstream 2.0kb upstream 2000 false Bd1: 54061108-54063107 Brachypodium distachyon
Bradi1g55420 2.0kb downstream 2.0kb downstream 3676 true Bd1: 54057432-54061107 Brachypodium distachyon
Bradi1g55420 2.0kb downstream 2.0kb downstream 2000 false Bd1: 54057432-54059431 Brachypodium distachyon
Bradi1g55420 5.0kb upstream 5.0kb upstream 6676 true Bd1: 54059432-54066107 Brachypodium distachyon
Bradi1g55420 5.0kb upstream 5.0kb upstream 5000 false Bd1: 54061108-54066107 Brachypodium distachyon
Bradi1g55420 5.0kb downstream 5.0kb downstream 6676 true Bd1: 54054432-54061107 Brachypodium distachyon
Bradi1g55420 5.0kb downstream 5.0kb downstream 5000 false Bd1: 54054432-54059431 Brachypodium distachyon
Bradi1g55420 10.0kb upstream 10.0kb upstream 11676 true Bd1: 54059432-54071107 Brachypodium distachyon
Bradi1g55420 10.0kb upstream 10.0kb upstream 10000 false Bd1: 54061108-54071107 Brachypodium distachyon
Bradi1g55420 10.0kb downstream 10.0kb downstream 11676 true Bd1: 54049432-54061107 Brachypodium distachyon
Bradi1g55420 10.0kb downstream 10.0kb downstream 10000 false Bd1: 54049432-54059431 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124480253 5269 Grass View MSA
122041688 5273 Angiosperm View MSA
121344906 5274 Embryophyte View MSA
123428543 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.819        
cufflinks 13.187     High  
cufflinks 12.032     High  
cufflinks 10.455     High  
cufflinks 1.454       Low
cufflinks 10.656     High  
cufflinks 14.088     High High
cufflinks 10.045     High  
cufflinks 12.386     High  
cufflinks 4.4        
cufflinks 2.707        
cufflinks 5.825        
cufflinks 1.211       Low
cufflinks 2.092       Low
cufflinks 2.0       Low
cufflinks 11.218     High  
cufflinks 12.84     High  
cufflinks 18.146     High High
cufflinks 5.813        
cufflinks 0.583       Low
cufflinks 9.846        
cufflinks 7.714        
cufflinks 7.115        
cufflinks 7.365        
cufflinks 11.373     High  
cufflinks 8.141        
cufflinks 1.692       Low
cufflinks 8.513        
cufflinks 8.532        
cufflinks 11.65     High  

0 Strain