Gene : Bradi1g55690 B. distachyon v3.1
Defline:  (1 of 1) PTHR11586:SF18 - NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN Genomic Order:  6982
Name:  ? Bradi1g55690 Secondary Identifier:  ? PAC:32792241
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g55690 0.5kb upstream 0.5kb upstream 8505 true Bd1: 54376159-54384663 Brachypodium distachyon
Bradi1g55690 0.5kb upstream 0.5kb upstream 500 false Bd1: 54384164-54384663 Brachypodium distachyon
Bradi1g55690 0.5kb downstream 0.5kb downstream 8505 true Bd1: 54375659-54384163 Brachypodium distachyon
Bradi1g55690 0.5kb downstream 0.5kb downstream 500 false Bd1: 54375659-54376158 Brachypodium distachyon
Bradi1g55690 1.0kb upstream 1.0kb upstream 9005 true Bd1: 54376159-54385163 Brachypodium distachyon
Bradi1g55690 1.0kb upstream 1.0kb upstream 1000 false Bd1: 54384164-54385163 Brachypodium distachyon
Bradi1g55690 1.0kb downstream 1.0kb downstream 9005 true Bd1: 54375159-54384163 Brachypodium distachyon
Bradi1g55690 1.0kb downstream 1.0kb downstream 1000 false Bd1: 54375159-54376158 Brachypodium distachyon
Bradi1g55690 2.0kb upstream 2.0kb upstream 10005 true Bd1: 54376159-54386163 Brachypodium distachyon
Bradi1g55690 2.0kb upstream 2.0kb upstream 2000 false Bd1: 54384164-54386163 Brachypodium distachyon
Bradi1g55690 2.0kb downstream 2.0kb downstream 10005 true Bd1: 54374159-54384163 Brachypodium distachyon
Bradi1g55690 2.0kb downstream 2.0kb downstream 2000 false Bd1: 54374159-54376158 Brachypodium distachyon
Bradi1g55690 5.0kb upstream 5.0kb upstream 13005 true Bd1: 54376159-54389163 Brachypodium distachyon
Bradi1g55690 5.0kb upstream 5.0kb upstream 5000 false Bd1: 54384164-54389163 Brachypodium distachyon
Bradi1g55690 5.0kb downstream 5.0kb downstream 13005 true Bd1: 54371159-54384163 Brachypodium distachyon
Bradi1g55690 5.0kb downstream 5.0kb downstream 5000 false Bd1: 54371159-54376158 Brachypodium distachyon
Bradi1g55690 10.0kb upstream 10.0kb upstream 18005 true Bd1: 54376159-54394163 Brachypodium distachyon
Bradi1g55690 10.0kb upstream 10.0kb upstream 10000 false Bd1: 54384164-54394163 Brachypodium distachyon
Bradi1g55690 10.0kb downstream 10.0kb downstream 18005 true Bd1: 54366159-54384163 Brachypodium distachyon
Bradi1g55690 10.0kb downstream 10.0kb downstream 10000 false Bd1: 54366159-54376158 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568725 5269 Grass View MSA
122045155 5273 Angiosperm View MSA
121346605 5274 Embryophyte View MSA
123427531 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.477        
cufflinks 2.537        
cufflinks 2.527        
cufflinks 3.491       High
cufflinks 1.856        
cufflinks 2.06        
cufflinks 2.251        
cufflinks 2.134        
cufflinks 1.951        
cufflinks 2.651        
cufflinks 1.354        
cufflinks 1.477        
cufflinks 1.47        
cufflinks 1.51        
cufflinks 1.883        
cufflinks 2.08        
cufflinks 2.978        
cufflinks 0.72       Low
cufflinks 2.789        
cufflinks 1.784        
cufflinks 2.09        
cufflinks 2.058        
cufflinks 1.9        
cufflinks 1.893        
cufflinks 2.301        
cufflinks 2.936        
cufflinks 1.203       Low
cufflinks 2.948        
cufflinks 3.101       High
cufflinks 1.82        

0 Strain