Gene : Bradi1g55640 B. distachyon v3.1
Defline:  (1 of 2) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  6976
Name:  ? Bradi1g55640 Secondary Identifier:  ? PAC:32803796
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g55640 0.5kb upstream 0.5kb upstream 6152 true Bd1: 54341278-54347429 Brachypodium distachyon
Bradi1g55640 0.5kb upstream 0.5kb upstream 500 false Bd1: 54346930-54347429 Brachypodium distachyon
Bradi1g55640 0.5kb downstream 0.5kb downstream 6152 true Bd1: 54340778-54346929 Brachypodium distachyon
Bradi1g55640 0.5kb downstream 0.5kb downstream 500 false Bd1: 54340778-54341277 Brachypodium distachyon
Bradi1g55640 1.0kb upstream 1.0kb upstream 6652 true Bd1: 54341278-54347929 Brachypodium distachyon
Bradi1g55640 1.0kb upstream 1.0kb upstream 1000 false Bd1: 54346930-54347929 Brachypodium distachyon
Bradi1g55640 1.0kb downstream 1.0kb downstream 6652 true Bd1: 54340278-54346929 Brachypodium distachyon
Bradi1g55640 1.0kb downstream 1.0kb downstream 1000 false Bd1: 54340278-54341277 Brachypodium distachyon
Bradi1g55640 2.0kb upstream 2.0kb upstream 7652 true Bd1: 54341278-54348929 Brachypodium distachyon
Bradi1g55640 2.0kb upstream 2.0kb upstream 2000 false Bd1: 54346930-54348929 Brachypodium distachyon
Bradi1g55640 2.0kb downstream 2.0kb downstream 7652 true Bd1: 54339278-54346929 Brachypodium distachyon
Bradi1g55640 2.0kb downstream 2.0kb downstream 2000 false Bd1: 54339278-54341277 Brachypodium distachyon
Bradi1g55640 5.0kb upstream 5.0kb upstream 10652 true Bd1: 54341278-54351929 Brachypodium distachyon
Bradi1g55640 5.0kb upstream 5.0kb upstream 5000 false Bd1: 54346930-54351929 Brachypodium distachyon
Bradi1g55640 5.0kb downstream 5.0kb downstream 10652 true Bd1: 54336278-54346929 Brachypodium distachyon
Bradi1g55640 5.0kb downstream 5.0kb downstream 5000 false Bd1: 54336278-54341277 Brachypodium distachyon
Bradi1g55640 10.0kb upstream 10.0kb upstream 15652 true Bd1: 54341278-54356929 Brachypodium distachyon
Bradi1g55640 10.0kb upstream 10.0kb upstream 10000 false Bd1: 54346930-54356929 Brachypodium distachyon
Bradi1g55640 10.0kb downstream 10.0kb downstream 15652 true Bd1: 54331278-54346929 Brachypodium distachyon
Bradi1g55640 10.0kb downstream 10.0kb downstream 10000 false Bd1: 54331278-54341277 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571408 5269 Grass View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.061        
cufflinks 2.461        
cufflinks 2.329        
cufflinks 1.961        
cufflinks 0.813        
cufflinks 2.021        
cufflinks 1.847        
cufflinks 2.095        
cufflinks 2.006        
cufflinks 1.415        
cufflinks 0.514       Low
cufflinks 2.424        
cufflinks 0.847        
cufflinks 0.608       Low
cufflinks 1.225        
cufflinks 2.144        
cufflinks 1.212        
cufflinks 4.024       High
cufflinks 0.975        
cufflinks 0.351       Low
cufflinks 1.75        
cufflinks 2.457        
cufflinks 1.901        
cufflinks 1.913        
cufflinks 1.566        
cufflinks 1.968        
cufflinks 0.385       Low
cufflinks 1.653        
cufflinks 1.969        
cufflinks 3.164       High

0 Strain