Gene : Bradi1g56580 B. distachyon v3.1
Defline:  (1 of 1) PTHR34058:SF1 - OXYGEN-EVOLVING ENHANCER PROTEIN 1-1, CHLOROPLASTIC-RELATED Genomic Order:  7084
Name:  ? Bradi1g56580 Secondary Identifier:  ? PAC:32799317
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g56580 0.5kb upstream 0.5kb upstream 2017 true Bd1: 55353211-55355227 Brachypodium distachyon
Bradi1g56580 0.5kb upstream 0.5kb upstream 500 false Bd1: 55354728-55355227 Brachypodium distachyon
Bradi1g56580 0.5kb downstream 0.5kb downstream 2017 true Bd1: 55352711-55354727 Brachypodium distachyon
Bradi1g56580 0.5kb downstream 0.5kb downstream 500 false Bd1: 55352711-55353210 Brachypodium distachyon
Bradi1g56580 1.0kb upstream 1.0kb upstream 2517 true Bd1: 55353211-55355727 Brachypodium distachyon
Bradi1g56580 1.0kb upstream 1.0kb upstream 1000 false Bd1: 55354728-55355727 Brachypodium distachyon
Bradi1g56580 1.0kb downstream 1.0kb downstream 2517 true Bd1: 55352211-55354727 Brachypodium distachyon
Bradi1g56580 1.0kb downstream 1.0kb downstream 1000 false Bd1: 55352211-55353210 Brachypodium distachyon
Bradi1g56580 2.0kb upstream 2.0kb upstream 3517 true Bd1: 55353211-55356727 Brachypodium distachyon
Bradi1g56580 2.0kb upstream 2.0kb upstream 2000 false Bd1: 55354728-55356727 Brachypodium distachyon
Bradi1g56580 2.0kb downstream 2.0kb downstream 3517 true Bd1: 55351211-55354727 Brachypodium distachyon
Bradi1g56580 2.0kb downstream 2.0kb downstream 2000 false Bd1: 55351211-55353210 Brachypodium distachyon
Bradi1g56580 5.0kb upstream 5.0kb upstream 6517 true Bd1: 55353211-55359727 Brachypodium distachyon
Bradi1g56580 5.0kb upstream 5.0kb upstream 5000 false Bd1: 55354728-55359727 Brachypodium distachyon
Bradi1g56580 5.0kb downstream 5.0kb downstream 6517 true Bd1: 55348211-55354727 Brachypodium distachyon
Bradi1g56580 5.0kb downstream 5.0kb downstream 5000 false Bd1: 55348211-55353210 Brachypodium distachyon
Bradi1g56580 10.0kb upstream 10.0kb upstream 11517 true Bd1: 55353211-55364727 Brachypodium distachyon
Bradi1g56580 10.0kb upstream 10.0kb upstream 10000 false Bd1: 55354728-55364727 Brachypodium distachyon
Bradi1g56580 10.0kb downstream 10.0kb downstream 11517 true Bd1: 55343211-55354727 Brachypodium distachyon
Bradi1g56580 10.0kb downstream 10.0kb downstream 10000 false Bd1: 55343211-55353210 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578046 5269 Grass View MSA
122047967 5273 Angiosperm View MSA
121344212 5274 Embryophyte View MSA
123425295 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1358.38     High  
cufflinks 1645.15     High  
cufflinks 1566.709     High  
cufflinks 1457.979     High  
cufflinks 1112.793     High  
cufflinks 2246.872     High  
cufflinks 2627.982     High  
cufflinks 2321.727     High  
cufflinks 2497.576     High  
cufflinks 2565.095     High  
cufflinks 2562.415     High  
cufflinks 1430.217     High  
cufflinks 3388.33     High  
cufflinks 4192.181     High High
cufflinks 1635.437     High  
cufflinks 2140.059     High  
cufflinks 2457.02     High  
cufflinks 33.817     High Low
cufflinks 1677.149     High  
cufflinks 398.224     High Low
cufflinks 1625.453     High  
cufflinks 1998.257     High  
cufflinks 2479.785     High  
cufflinks 2628.416     High  
cufflinks 2569.939     High  
cufflinks 1437.292     High  
cufflinks 3354.624     High  
cufflinks 2085.907     High  
cufflinks 2279.593     High  
cufflinks 875.064     High  

0 Strain