Gene : Bradi1g62480 B. distachyon v3.1
Defline:  (1 of 1) PTHR11225 - NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN Genomic Order:  7905
Name:  ? Bradi1g62480 Secondary Identifier:  ? PAC:32798617
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g62480 0.5kb upstream 0.5kb upstream 8237 true Bd1: 61903931-61912167 Brachypodium distachyon
Bradi1g62480 0.5kb upstream 0.5kb upstream 500 false Bd1: 61903931-61904430 Brachypodium distachyon
Bradi1g62480 0.5kb downstream 0.5kb downstream 8237 true Bd1: 61904431-61912667 Brachypodium distachyon
Bradi1g62480 0.5kb downstream 0.5kb downstream 500 false Bd1: 61912168-61912667 Brachypodium distachyon
Bradi1g62480 1.0kb upstream 1.0kb upstream 8737 true Bd1: 61903431-61912167 Brachypodium distachyon
Bradi1g62480 1.0kb upstream 1.0kb upstream 1000 false Bd1: 61903431-61904430 Brachypodium distachyon
Bradi1g62480 1.0kb downstream 1.0kb downstream 8737 true Bd1: 61904431-61913167 Brachypodium distachyon
Bradi1g62480 1.0kb downstream 1.0kb downstream 1000 false Bd1: 61912168-61913167 Brachypodium distachyon
Bradi1g62480 2.0kb upstream 2.0kb upstream 9737 true Bd1: 61902431-61912167 Brachypodium distachyon
Bradi1g62480 2.0kb upstream 2.0kb upstream 2000 false Bd1: 61902431-61904430 Brachypodium distachyon
Bradi1g62480 2.0kb downstream 2.0kb downstream 9737 true Bd1: 61904431-61914167 Brachypodium distachyon
Bradi1g62480 2.0kb downstream 2.0kb downstream 2000 false Bd1: 61912168-61914167 Brachypodium distachyon
Bradi1g62480 5.0kb upstream 5.0kb upstream 12737 true Bd1: 61899431-61912167 Brachypodium distachyon
Bradi1g62480 5.0kb upstream 5.0kb upstream 5000 false Bd1: 61899431-61904430 Brachypodium distachyon
Bradi1g62480 5.0kb downstream 5.0kb downstream 12737 true Bd1: 61904431-61917167 Brachypodium distachyon
Bradi1g62480 5.0kb downstream 5.0kb downstream 5000 false Bd1: 61912168-61917167 Brachypodium distachyon
Bradi1g62480 10.0kb upstream 10.0kb upstream 17737 true Bd1: 61894431-61912167 Brachypodium distachyon
Bradi1g62480 10.0kb upstream 10.0kb upstream 10000 false Bd1: 61894431-61904430 Brachypodium distachyon
Bradi1g62480 10.0kb downstream 10.0kb downstream 17737 true Bd1: 61904431-61922167 Brachypodium distachyon
Bradi1g62480 10.0kb downstream 10.0kb downstream 10000 false Bd1: 61912168-61922167 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574172 5269 Grass View MSA
122043795 5273 Angiosperm View MSA
121346539 5274 Embryophyte View MSA
123424897 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.35        
cufflinks 10.078        
cufflinks 11.894     High High
cufflinks 8.108        
cufflinks 2.778       Low
cufflinks 8.356        
cufflinks 8.206        
cufflinks 6.714        
cufflinks 7.641        
cufflinks 6.235        
cufflinks 6.788        
cufflinks 6.989        
cufflinks 4.61        
cufflinks 5.01        
cufflinks 3.992       Low
cufflinks 8.175        
cufflinks 4.4        
cufflinks 13.013     High High
cufflinks 5.515        
cufflinks 3.393       Low
cufflinks 6.221        
cufflinks 9.84        
cufflinks 6.48        
cufflinks 6.484        
cufflinks 7.514        
cufflinks 9.779        
cufflinks 5.902        
cufflinks 9.714        
cufflinks 9.265        
cufflinks 8.727        

0 Strain