Gene : Bradi5g12347 B. distachyon v3.1
Defline:  (1 of 2) PTHR11875//PTHR11875:SF68 - TESTIS-SPECIFIC Y-ENCODED PROTEIN Genomic Order:  1337
Name:  ? Bradi5g12347 Secondary Identifier:  ? PAC:32808173
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g12347 0.5kb upstream 0.5kb upstream 5787 true Bd5: 15972667-15978453 Brachypodium distachyon
Bradi5g12347 0.5kb upstream 0.5kb upstream 500 false Bd5: 15977954-15978453 Brachypodium distachyon
Bradi5g12347 0.5kb downstream 0.5kb downstream 5787 true Bd5: 15972167-15977953 Brachypodium distachyon
Bradi5g12347 0.5kb downstream 0.5kb downstream 500 false Bd5: 15972167-15972666 Brachypodium distachyon
Bradi5g12347 1.0kb upstream 1.0kb upstream 6287 true Bd5: 15972667-15978953 Brachypodium distachyon
Bradi5g12347 1.0kb upstream 1.0kb upstream 1000 false Bd5: 15977954-15978953 Brachypodium distachyon
Bradi5g12347 1.0kb downstream 1.0kb downstream 6287 true Bd5: 15971667-15977953 Brachypodium distachyon
Bradi5g12347 1.0kb downstream 1.0kb downstream 1000 false Bd5: 15971667-15972666 Brachypodium distachyon
Bradi5g12347 2.0kb upstream 2.0kb upstream 7287 true Bd5: 15972667-15979953 Brachypodium distachyon
Bradi5g12347 2.0kb upstream 2.0kb upstream 2000 false Bd5: 15977954-15979953 Brachypodium distachyon
Bradi5g12347 2.0kb downstream 2.0kb downstream 7287 true Bd5: 15970667-15977953 Brachypodium distachyon
Bradi5g12347 2.0kb downstream 2.0kb downstream 2000 false Bd5: 15970667-15972666 Brachypodium distachyon
Bradi5g12347 5.0kb upstream 5.0kb upstream 10287 true Bd5: 15972667-15982953 Brachypodium distachyon
Bradi5g12347 5.0kb upstream 5.0kb upstream 5000 false Bd5: 15977954-15982953 Brachypodium distachyon
Bradi5g12347 5.0kb downstream 5.0kb downstream 10287 true Bd5: 15967667-15977953 Brachypodium distachyon
Bradi5g12347 5.0kb downstream 5.0kb downstream 5000 false Bd5: 15967667-15972666 Brachypodium distachyon
Bradi5g12347 10.0kb upstream 10.0kb upstream 15287 true Bd5: 15972667-15987953 Brachypodium distachyon
Bradi5g12347 10.0kb upstream 10.0kb upstream 10000 false Bd5: 15977954-15987953 Brachypodium distachyon
Bradi5g12347 10.0kb downstream 10.0kb downstream 15287 true Bd5: 15962667-15977953 Brachypodium distachyon
Bradi5g12347 10.0kb downstream 10.0kb downstream 10000 false Bd5: 15962667-15972666 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589362 5269 Grass View MSA
122049668 5273 Angiosperm View MSA
121348262 5274 Embryophyte View MSA
123426622 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.521        
cufflinks 3.509        
cufflinks 2.376        
cufflinks 5.029       High
cufflinks 1.401        
cufflinks 2.546        
cufflinks 2.692        
cufflinks 1.313        
cufflinks 2.163        
cufflinks 1.697        
cufflinks 0.866       Low
cufflinks 1.91        
cufflinks 0.677       Low
cufflinks 0.827       Low
cufflinks 1.296        
cufflinks 2.465        
cufflinks 3.047        
cufflinks 4.825       High
cufflinks 2.127        
cufflinks 0.429       Low
cufflinks 3.089        
cufflinks 1.656        
cufflinks 1.318        
cufflinks 2.142        
cufflinks 3.578        
cufflinks 2.354        
cufflinks 1.091       Low
cufflinks 1.67        
cufflinks 1.404        
cufflinks 3.047        

0 Strain