Gene : Bradi5g12330 B. distachyon v3.1
Defline:  (1 of 1) PTHR10836//PTHR10836:SF38 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPA1, CHLOROPLASTIC-RELATED Genomic Order:  1331
Name:  ? Bradi5g12330 Secondary Identifier:  ? PAC:32810979
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-1042 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g12330 0.5kb upstream 0.5kb upstream 5845 true Bd5: 15937657-15943501 Brachypodium distachyon
Bradi5g12330 0.5kb upstream 0.5kb upstream 500 false Bd5: 15937657-15938156 Brachypodium distachyon
Bradi5g12330 0.5kb downstream 0.5kb downstream 5845 true Bd5: 15938157-15944001 Brachypodium distachyon
Bradi5g12330 0.5kb downstream 0.5kb downstream 500 false Bd5: 15943502-15944001 Brachypodium distachyon
Bradi5g12330 1.0kb upstream 1.0kb upstream 6345 true Bd5: 15937157-15943501 Brachypodium distachyon
Bradi5g12330 1.0kb upstream 1.0kb upstream 1000 false Bd5: 15937157-15938156 Brachypodium distachyon
Bradi5g12330 1.0kb downstream 1.0kb downstream 6345 true Bd5: 15938157-15944501 Brachypodium distachyon
Bradi5g12330 1.0kb downstream 1.0kb downstream 1000 false Bd5: 15943502-15944501 Brachypodium distachyon
Bradi5g12330 2.0kb upstream 2.0kb upstream 7345 true Bd5: 15936157-15943501 Brachypodium distachyon
Bradi5g12330 2.0kb upstream 2.0kb upstream 2000 false Bd5: 15936157-15938156 Brachypodium distachyon
Bradi5g12330 2.0kb downstream 2.0kb downstream 7345 true Bd5: 15938157-15945501 Brachypodium distachyon
Bradi5g12330 2.0kb downstream 2.0kb downstream 2000 false Bd5: 15943502-15945501 Brachypodium distachyon
Bradi5g12330 5.0kb upstream 5.0kb upstream 10345 true Bd5: 15933157-15943501 Brachypodium distachyon
Bradi5g12330 5.0kb upstream 5.0kb upstream 5000 false Bd5: 15933157-15938156 Brachypodium distachyon
Bradi5g12330 5.0kb downstream 5.0kb downstream 10345 true Bd5: 15938157-15948501 Brachypodium distachyon
Bradi5g12330 5.0kb downstream 5.0kb downstream 5000 false Bd5: 15943502-15948501 Brachypodium distachyon
Bradi5g12330 10.0kb upstream 10.0kb upstream 15345 true Bd5: 15928157-15943501 Brachypodium distachyon
Bradi5g12330 10.0kb upstream 10.0kb upstream 10000 false Bd5: 15928157-15938156 Brachypodium distachyon
Bradi5g12330 10.0kb downstream 10.0kb downstream 15345 true Bd5: 15938157-15953501 Brachypodium distachyon
Bradi5g12330 10.0kb downstream 10.0kb downstream 10000 false Bd5: 15943502-15953501 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578126 5269 Grass View MSA
122045489 5273 Angiosperm View MSA
121346351 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 221.231     High  
cufflinks 226.83     High  
cufflinks 207.369     High  
cufflinks 260.997     High  
cufflinks 99.04     High  
cufflinks 232.915     High  
cufflinks 261.442     High  
cufflinks 240.12     High  
cufflinks 248.974     High  
cufflinks 186.907     High  
cufflinks 97.836     High  
cufflinks 170.924     High  
cufflinks 350.96     High  
cufflinks 281.561     High  
cufflinks 218.833     High  
cufflinks 230.723     High  
cufflinks 225.443     High  
cufflinks 2.025       Low
cufflinks 134.846     High  
cufflinks 16.324     High Low
cufflinks 80.954     High  
cufflinks 164.617     High  
cufflinks 254.959     High  
cufflinks 279.434     High  
cufflinks 241.529     High  
cufflinks 175.696     High  
cufflinks 218.279     High  
cufflinks 192.843     High  
cufflinks 200.583     High  
cufflinks 70.516     High  

0 Strain