Gene : Bradi5g12250 B. distachyon v3.1
Defline:  (1 of 1) PTHR10091//PTHR10091:SF12 - ALDOSE-1-EPIMERASE // SUBFAMILY NOT NAMED Genomic Order:  1319
Name:  ? Bradi5g12250 Secondary Identifier:  ? PAC:32811879
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY66-422 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g12250 0.5kb upstream 0.5kb upstream 2548 true Bd5: 15850343-15852890 Brachypodium distachyon
Bradi5g12250 0.5kb upstream 0.5kb upstream 500 false Bd5: 15850343-15850842 Brachypodium distachyon
Bradi5g12250 0.5kb downstream 0.5kb downstream 2548 true Bd5: 15850843-15853390 Brachypodium distachyon
Bradi5g12250 0.5kb downstream 0.5kb downstream 500 false Bd5: 15852891-15853390 Brachypodium distachyon
Bradi5g12250 1.0kb upstream 1.0kb upstream 3048 true Bd5: 15849843-15852890 Brachypodium distachyon
Bradi5g12250 1.0kb upstream 1.0kb upstream 1000 false Bd5: 15849843-15850842 Brachypodium distachyon
Bradi5g12250 1.0kb downstream 1.0kb downstream 3048 true Bd5: 15850843-15853890 Brachypodium distachyon
Bradi5g12250 1.0kb downstream 1.0kb downstream 1000 false Bd5: 15852891-15853890 Brachypodium distachyon
Bradi5g12250 2.0kb upstream 2.0kb upstream 4048 true Bd5: 15848843-15852890 Brachypodium distachyon
Bradi5g12250 2.0kb upstream 2.0kb upstream 2000 false Bd5: 15848843-15850842 Brachypodium distachyon
Bradi5g12250 2.0kb downstream 2.0kb downstream 4048 true Bd5: 15850843-15854890 Brachypodium distachyon
Bradi5g12250 2.0kb downstream 2.0kb downstream 2000 false Bd5: 15852891-15854890 Brachypodium distachyon
Bradi5g12250 5.0kb upstream 5.0kb upstream 7048 true Bd5: 15845843-15852890 Brachypodium distachyon
Bradi5g12250 5.0kb upstream 5.0kb upstream 5000 false Bd5: 15845843-15850842 Brachypodium distachyon
Bradi5g12250 5.0kb downstream 5.0kb downstream 7048 true Bd5: 15850843-15857890 Brachypodium distachyon
Bradi5g12250 5.0kb downstream 5.0kb downstream 5000 false Bd5: 15852891-15857890 Brachypodium distachyon
Bradi5g12250 10.0kb upstream 10.0kb upstream 12048 true Bd5: 15840843-15852890 Brachypodium distachyon
Bradi5g12250 10.0kb upstream 10.0kb upstream 10000 false Bd5: 15840843-15850842 Brachypodium distachyon
Bradi5g12250 10.0kb downstream 10.0kb downstream 12048 true Bd5: 15850843-15862890 Brachypodium distachyon
Bradi5g12250 10.0kb downstream 10.0kb downstream 10000 false Bd5: 15852891-15862890 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586765 5269 Grass View MSA
122044460 5273 Angiosperm View MSA
121310296 5274 Embryophyte View MSA
123425845 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.067     Low  
cufflinks 0.023     Low  
cufflinks 0.013     Low  
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.107        
cufflinks 0.074     Low  
cufflinks 23.917     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.036     Low  
cufflinks 0.008     Low  
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain