Gene : Bradi5g13340 B. distachyon v3.1
Defline:  (1 of 3) PTHR11102//PTHR11102:SF99 - SEL-1-LIKE PROTEIN Genomic Order:  1466
Name:  ? Bradi5g13340 Secondary Identifier:  ? PAC:32808006
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g13340 0.5kb upstream 0.5kb upstream 5428 true Bd5: 17073644-17079071 Brachypodium distachyon
Bradi5g13340 0.5kb upstream 0.5kb upstream 500 false Bd5: 17073644-17074143 Brachypodium distachyon
Bradi5g13340 0.5kb downstream 0.5kb downstream 5428 true Bd5: 17074144-17079571 Brachypodium distachyon
Bradi5g13340 0.5kb downstream 0.5kb downstream 500 false Bd5: 17079072-17079571 Brachypodium distachyon
Bradi5g13340 1.0kb upstream 1.0kb upstream 5928 true Bd5: 17073144-17079071 Brachypodium distachyon
Bradi5g13340 1.0kb upstream 1.0kb upstream 1000 false Bd5: 17073144-17074143 Brachypodium distachyon
Bradi5g13340 1.0kb downstream 1.0kb downstream 5928 true Bd5: 17074144-17080071 Brachypodium distachyon
Bradi5g13340 1.0kb downstream 1.0kb downstream 1000 false Bd5: 17079072-17080071 Brachypodium distachyon
Bradi5g13340 2.0kb upstream 2.0kb upstream 6928 true Bd5: 17072144-17079071 Brachypodium distachyon
Bradi5g13340 2.0kb upstream 2.0kb upstream 2000 false Bd5: 17072144-17074143 Brachypodium distachyon
Bradi5g13340 2.0kb downstream 2.0kb downstream 6928 true Bd5: 17074144-17081071 Brachypodium distachyon
Bradi5g13340 2.0kb downstream 2.0kb downstream 2000 false Bd5: 17079072-17081071 Brachypodium distachyon
Bradi5g13340 5.0kb upstream 5.0kb upstream 9928 true Bd5: 17069144-17079071 Brachypodium distachyon
Bradi5g13340 5.0kb upstream 5.0kb upstream 5000 false Bd5: 17069144-17074143 Brachypodium distachyon
Bradi5g13340 5.0kb downstream 5.0kb downstream 9928 true Bd5: 17074144-17084071 Brachypodium distachyon
Bradi5g13340 5.0kb downstream 5.0kb downstream 5000 false Bd5: 17079072-17084071 Brachypodium distachyon
Bradi5g13340 10.0kb upstream 10.0kb upstream 14928 true Bd5: 17064144-17079071 Brachypodium distachyon
Bradi5g13340 10.0kb upstream 10.0kb upstream 10000 false Bd5: 17064144-17074143 Brachypodium distachyon
Bradi5g13340 10.0kb downstream 10.0kb downstream 14928 true Bd5: 17074144-17089071 Brachypodium distachyon
Bradi5g13340 10.0kb downstream 10.0kb downstream 10000 false Bd5: 17079072-17089071 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570277 5269 Grass View MSA
122044811 5273 Angiosperm View MSA
123428907 5275 Viridiplantae View MSA
121345855 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.928        
cufflinks 1.977       Low
cufflinks 6.556       High
cufflinks 1.804       Low
cufflinks 3.309        
cufflinks 2.037        
cufflinks 1.892       Low
cufflinks 2.166        
cufflinks 2.098        
cufflinks 8.358       High
cufflinks 6.504       High
cufflinks 2.303        
cufflinks 3.769        
cufflinks 4.417        
cufflinks 2.633        
cufflinks 2.681        
cufflinks 2.556        
cufflinks 2.615        
cufflinks 5.535       High
cufflinks 5.071        
cufflinks 2.546        
cufflinks 6.54       High
cufflinks 1.965       Low
cufflinks 1.847       Low
cufflinks 1.88       Low
cufflinks 7.485       High
cufflinks 4.398        
cufflinks 8.225       High
cufflinks 7.714       High
cufflinks 1.918       Low

0 Strain