Gene : Bradi1g67480 B. distachyon v3.1
Defline:  (1 of 2) K09835 - prolycopene isomerase (crtISO, crtH) Genomic Order:  8531
Name:  ? Bradi1g67480 Secondary Identifier:  ? PAC:32800089
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6475 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g67480 0.5kb upstream 0.5kb upstream 6578 true Bd1: 66361487-66368064 Brachypodium distachyon
Bradi1g67480 0.5kb upstream 0.5kb upstream 500 false Bd1: 66361487-66361986 Brachypodium distachyon
Bradi1g67480 0.5kb downstream 0.5kb downstream 6578 true Bd1: 66361987-66368564 Brachypodium distachyon
Bradi1g67480 0.5kb downstream 0.5kb downstream 500 false Bd1: 66368065-66368564 Brachypodium distachyon
Bradi1g67480 1.0kb upstream 1.0kb upstream 7078 true Bd1: 66360987-66368064 Brachypodium distachyon
Bradi1g67480 1.0kb upstream 1.0kb upstream 1000 false Bd1: 66360987-66361986 Brachypodium distachyon
Bradi1g67480 1.0kb downstream 1.0kb downstream 7078 true Bd1: 66361987-66369064 Brachypodium distachyon
Bradi1g67480 1.0kb downstream 1.0kb downstream 1000 false Bd1: 66368065-66369064 Brachypodium distachyon
Bradi1g67480 2.0kb upstream 2.0kb upstream 8078 true Bd1: 66359987-66368064 Brachypodium distachyon
Bradi1g67480 2.0kb upstream 2.0kb upstream 2000 false Bd1: 66359987-66361986 Brachypodium distachyon
Bradi1g67480 2.0kb downstream 2.0kb downstream 8078 true Bd1: 66361987-66370064 Brachypodium distachyon
Bradi1g67480 2.0kb downstream 2.0kb downstream 2000 false Bd1: 66368065-66370064 Brachypodium distachyon
Bradi1g67480 5.0kb upstream 5.0kb upstream 11078 true Bd1: 66356987-66368064 Brachypodium distachyon
Bradi1g67480 5.0kb upstream 5.0kb upstream 5000 false Bd1: 66356987-66361986 Brachypodium distachyon
Bradi1g67480 5.0kb downstream 5.0kb downstream 11078 true Bd1: 66361987-66373064 Brachypodium distachyon
Bradi1g67480 5.0kb downstream 5.0kb downstream 5000 false Bd1: 66368065-66373064 Brachypodium distachyon
Bradi1g67480 10.0kb upstream 10.0kb upstream 16078 true Bd1: 66351987-66368064 Brachypodium distachyon
Bradi1g67480 10.0kb upstream 10.0kb upstream 10000 false Bd1: 66351987-66361986 Brachypodium distachyon
Bradi1g67480 10.0kb downstream 10.0kb downstream 16078 true Bd1: 66361987-66378064 Brachypodium distachyon
Bradi1g67480 10.0kb downstream 10.0kb downstream 10000 false Bd1: 66368065-66378064 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026345 5273 Angiosperm View MSA
124578068 5269 Grass View MSA
121345795 5274 Embryophyte View MSA
123425130 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.66        
cufflinks 6.218        
cufflinks 8.099       High
cufflinks 5.402        
cufflinks 2.259       Low
cufflinks 6.405        
cufflinks 6.281        
cufflinks 5.055        
cufflinks 5.654        
cufflinks 6.268        
cufflinks 8.917     High High
cufflinks 5.845        
cufflinks 5.73        
cufflinks 6.716        
cufflinks 4.402        
cufflinks 5.926        
cufflinks 4.285        
cufflinks 4.286        
cufflinks 4.254        
cufflinks 2.718       Low
cufflinks 3.763        
cufflinks 7.511       High
cufflinks 4.858        
cufflinks 5.199        
cufflinks 5.692        
cufflinks 7.841       High
cufflinks 8.443       High
cufflinks 8.367       High
cufflinks 6.844        
cufflinks 3.891        

0 Strain