Gene : Bradi1g67790 B. distachyon v3.1
Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  8570
Name:  ? Bradi1g67790 Secondary Identifier:  ? PAC:32797167
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ARO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6163 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g67790 0.5kb upstream 0.5kb upstream 4946 true Bd1: 66606846-66611791 Brachypodium distachyon
Bradi1g67790 0.5kb upstream 0.5kb upstream 500 false Bd1: 66606846-66607345 Brachypodium distachyon
Bradi1g67790 0.5kb downstream 0.5kb downstream 4946 true Bd1: 66607346-66612291 Brachypodium distachyon
Bradi1g67790 0.5kb downstream 0.5kb downstream 500 false Bd1: 66611792-66612291 Brachypodium distachyon
Bradi1g67790 1.0kb upstream 1.0kb upstream 5446 true Bd1: 66606346-66611791 Brachypodium distachyon
Bradi1g67790 1.0kb upstream 1.0kb upstream 1000 false Bd1: 66606346-66607345 Brachypodium distachyon
Bradi1g67790 1.0kb downstream 1.0kb downstream 5446 true Bd1: 66607346-66612791 Brachypodium distachyon
Bradi1g67790 1.0kb downstream 1.0kb downstream 1000 false Bd1: 66611792-66612791 Brachypodium distachyon
Bradi1g67790 2.0kb upstream 2.0kb upstream 6446 true Bd1: 66605346-66611791 Brachypodium distachyon
Bradi1g67790 2.0kb upstream 2.0kb upstream 2000 false Bd1: 66605346-66607345 Brachypodium distachyon
Bradi1g67790 2.0kb downstream 2.0kb downstream 6446 true Bd1: 66607346-66613791 Brachypodium distachyon
Bradi1g67790 2.0kb downstream 2.0kb downstream 2000 false Bd1: 66611792-66613791 Brachypodium distachyon
Bradi1g67790 5.0kb upstream 5.0kb upstream 9446 true Bd1: 66602346-66611791 Brachypodium distachyon
Bradi1g67790 5.0kb upstream 5.0kb upstream 5000 false Bd1: 66602346-66607345 Brachypodium distachyon
Bradi1g67790 5.0kb downstream 5.0kb downstream 9446 true Bd1: 66607346-66616791 Brachypodium distachyon
Bradi1g67790 5.0kb downstream 5.0kb downstream 5000 false Bd1: 66611792-66616791 Brachypodium distachyon
Bradi1g67790 10.0kb upstream 10.0kb upstream 14446 true Bd1: 66597346-66611791 Brachypodium distachyon
Bradi1g67790 10.0kb upstream 10.0kb upstream 10000 false Bd1: 66597346-66607345 Brachypodium distachyon
Bradi1g67790 10.0kb downstream 10.0kb downstream 14446 true Bd1: 66607346-66621791 Brachypodium distachyon
Bradi1g67790 10.0kb downstream 10.0kb downstream 10000 false Bd1: 66611792-66621791 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
124574152 5269 Grass View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.485     High High
cufflinks 24.285     High  
cufflinks 20.907     High  
cufflinks 26.116     High  
cufflinks 33.529     High  
cufflinks 22.818     High  
cufflinks 21.81     High  
cufflinks 36.087     High High
cufflinks 26.945     High  
cufflinks 14.209     High Low
cufflinks 17.786     High  
cufflinks 26.279     High  
cufflinks 18.27     High  
cufflinks 16.777     High  
cufflinks 54.008     High High
cufflinks 24.636     High  
cufflinks 25.499     High  
cufflinks 39.842     High High
cufflinks 37.344     High High
cufflinks 9.993       Low
cufflinks 27.525     High  
cufflinks 20.826     High  
cufflinks 37.766     High High
cufflinks 29.686     High  
cufflinks 21.567     High  
cufflinks 19.218     High  
cufflinks 16.352     High  
cufflinks 17.579     High  
cufflinks 17.715     High  
cufflinks 28.667     High  

0 Strain