Gene : Bradi5g10800 B. distachyon v3.1
Defline:  (1 of 1) PTHR22904:SF373 - PROTEIN TIC 40, CHLOROPLASTIC Genomic Order:  1145
Name:  ? Bradi5g10800 Secondary Identifier:  ? PAC:32810692
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g10800 0.5kb upstream 0.5kb upstream 6790 true Bd5: 14261038-14267827 Brachypodium distachyon
Bradi5g10800 0.5kb upstream 0.5kb upstream 500 false Bd5: 14267328-14267827 Brachypodium distachyon
Bradi5g10800 0.5kb downstream 0.5kb downstream 6790 true Bd5: 14260538-14267327 Brachypodium distachyon
Bradi5g10800 0.5kb downstream 0.5kb downstream 500 false Bd5: 14260538-14261037 Brachypodium distachyon
Bradi5g10800 1.0kb upstream 1.0kb upstream 7290 true Bd5: 14261038-14268327 Brachypodium distachyon
Bradi5g10800 1.0kb upstream 1.0kb upstream 1000 false Bd5: 14267328-14268327 Brachypodium distachyon
Bradi5g10800 1.0kb downstream 1.0kb downstream 7290 true Bd5: 14260038-14267327 Brachypodium distachyon
Bradi5g10800 1.0kb downstream 1.0kb downstream 1000 false Bd5: 14260038-14261037 Brachypodium distachyon
Bradi5g10800 2.0kb upstream 2.0kb upstream 8290 true Bd5: 14261038-14269327 Brachypodium distachyon
Bradi5g10800 2.0kb upstream 2.0kb upstream 2000 false Bd5: 14267328-14269327 Brachypodium distachyon
Bradi5g10800 2.0kb downstream 2.0kb downstream 8290 true Bd5: 14259038-14267327 Brachypodium distachyon
Bradi5g10800 2.0kb downstream 2.0kb downstream 2000 false Bd5: 14259038-14261037 Brachypodium distachyon
Bradi5g10800 5.0kb upstream 5.0kb upstream 11290 true Bd5: 14261038-14272327 Brachypodium distachyon
Bradi5g10800 5.0kb upstream 5.0kb upstream 5000 false Bd5: 14267328-14272327 Brachypodium distachyon
Bradi5g10800 5.0kb downstream 5.0kb downstream 11290 true Bd5: 14256038-14267327 Brachypodium distachyon
Bradi5g10800 5.0kb downstream 5.0kb downstream 5000 false Bd5: 14256038-14261037 Brachypodium distachyon
Bradi5g10800 10.0kb upstream 10.0kb upstream 16290 true Bd5: 14261038-14277327 Brachypodium distachyon
Bradi5g10800 10.0kb upstream 10.0kb upstream 10000 false Bd5: 14267328-14277327 Brachypodium distachyon
Bradi5g10800 10.0kb downstream 10.0kb downstream 16290 true Bd5: 14251038-14267327 Brachypodium distachyon
Bradi5g10800 10.0kb downstream 10.0kb downstream 10000 false Bd5: 14251038-14261037 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588048 5269 Grass View MSA
122043574 5273 Angiosperm View MSA
121344558 5274 Embryophyte View MSA
123424576 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.933        
cufflinks 7.954       High
cufflinks 6.679        
cufflinks 7.94       High
cufflinks 3.84       Low
cufflinks 5.955        
cufflinks 6.609        
cufflinks 6.142        
cufflinks 5.963        
cufflinks 4.983        
cufflinks 5.734        
cufflinks 5.248        
cufflinks 3.859       Low
cufflinks 4.633        
cufflinks 3.896       Low
cufflinks 6.852        
cufflinks 5.12        
cufflinks 4.3        
cufflinks 4.601        
cufflinks 4.698        
cufflinks 4.183        
cufflinks 5.922        
cufflinks 5.806        
cufflinks 6.166        
cufflinks 6.876        
cufflinks 6.829        
cufflinks 4.786        
cufflinks 5.802        
cufflinks 5.706        
cufflinks 5.808        

0 Strain