Gene : Bradi1g68550 B. distachyon v3.1
Defline:  (1 of 1) PTHR15319:SF1 - TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT C Genomic Order:  8680
Name:  ? Bradi1g68550 Secondary Identifier:  ? PAC:32803789
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g68550 0.5kb upstream 0.5kb upstream 3717 true Bd1: 67324236-67327952 Brachypodium distachyon
Bradi1g68550 0.5kb upstream 0.5kb upstream 500 false Bd1: 67327453-67327952 Brachypodium distachyon
Bradi1g68550 0.5kb downstream 0.5kb downstream 3717 true Bd1: 67323736-67327452 Brachypodium distachyon
Bradi1g68550 0.5kb downstream 0.5kb downstream 500 false Bd1: 67323736-67324235 Brachypodium distachyon
Bradi1g68550 1.0kb upstream 1.0kb upstream 4217 true Bd1: 67324236-67328452 Brachypodium distachyon
Bradi1g68550 1.0kb upstream 1.0kb upstream 1000 false Bd1: 67327453-67328452 Brachypodium distachyon
Bradi1g68550 1.0kb downstream 1.0kb downstream 4217 true Bd1: 67323236-67327452 Brachypodium distachyon
Bradi1g68550 1.0kb downstream 1.0kb downstream 1000 false Bd1: 67323236-67324235 Brachypodium distachyon
Bradi1g68550 2.0kb upstream 2.0kb upstream 5217 true Bd1: 67324236-67329452 Brachypodium distachyon
Bradi1g68550 2.0kb upstream 2.0kb upstream 2000 false Bd1: 67327453-67329452 Brachypodium distachyon
Bradi1g68550 2.0kb downstream 2.0kb downstream 5217 true Bd1: 67322236-67327452 Brachypodium distachyon
Bradi1g68550 2.0kb downstream 2.0kb downstream 2000 false Bd1: 67322236-67324235 Brachypodium distachyon
Bradi1g68550 5.0kb upstream 5.0kb upstream 8217 true Bd1: 67324236-67332452 Brachypodium distachyon
Bradi1g68550 5.0kb upstream 5.0kb upstream 5000 false Bd1: 67327453-67332452 Brachypodium distachyon
Bradi1g68550 5.0kb downstream 5.0kb downstream 8217 true Bd1: 67319236-67327452 Brachypodium distachyon
Bradi1g68550 5.0kb downstream 5.0kb downstream 5000 false Bd1: 67319236-67324235 Brachypodium distachyon
Bradi1g68550 10.0kb upstream 10.0kb upstream 13217 true Bd1: 67324236-67337452 Brachypodium distachyon
Bradi1g68550 10.0kb upstream 10.0kb upstream 10000 false Bd1: 67327453-67337452 Brachypodium distachyon
Bradi1g68550 10.0kb downstream 10.0kb downstream 13217 true Bd1: 67314236-67327452 Brachypodium distachyon
Bradi1g68550 10.0kb downstream 10.0kb downstream 10000 false Bd1: 67314236-67324235 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569581 5269 Grass View MSA
122049864 5273 Angiosperm View MSA
121348970 5274 Embryophyte View MSA
123381106 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.345        
cufflinks 2.336        
cufflinks 2.12        
cufflinks 2.019        
cufflinks 0.399       Low
cufflinks 2.123        
cufflinks 2.133        
cufflinks 2.064        
cufflinks 2.005        
cufflinks 0.874        
cufflinks 1.789        
cufflinks 1.95        
cufflinks 1.181        
cufflinks 1.356        
cufflinks 0.827       Low
cufflinks 1.987        
cufflinks 1.757        
cufflinks 3.874       High
cufflinks 0.746       Low
cufflinks 0.441       Low
cufflinks 2.03        
cufflinks 1.768        
cufflinks 1.835        
cufflinks 1.818        
cufflinks 2.036        
cufflinks 1.838        
cufflinks 2.254        
cufflinks 1.661        
cufflinks 1.563        
cufflinks 2.458        

0 Strain