Gene : Bradi5g12010 B. distachyon v3.1
Defline:  (1 of 1) PTHR23160//PTHR23160:SF3 - MYOSIN HEAVY CHAIN-RELATED // SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  1289
Name:  ? Bradi5g12010 Secondary Identifier:  ? PAC:32811163
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g12010 0.5kb upstream 0.5kb upstream 9345 true Bd5: 15609729-15619073 Brachypodium distachyon
Bradi5g12010 0.5kb upstream 0.5kb upstream 500 false Bd5: 15609729-15610228 Brachypodium distachyon
Bradi5g12010 0.5kb downstream 0.5kb downstream 9345 true Bd5: 15610229-15619573 Brachypodium distachyon
Bradi5g12010 0.5kb downstream 0.5kb downstream 500 false Bd5: 15619074-15619573 Brachypodium distachyon
Bradi5g12010 1.0kb upstream 1.0kb upstream 9845 true Bd5: 15609229-15619073 Brachypodium distachyon
Bradi5g12010 1.0kb upstream 1.0kb upstream 1000 false Bd5: 15609229-15610228 Brachypodium distachyon
Bradi5g12010 1.0kb downstream 1.0kb downstream 9845 true Bd5: 15610229-15620073 Brachypodium distachyon
Bradi5g12010 1.0kb downstream 1.0kb downstream 1000 false Bd5: 15619074-15620073 Brachypodium distachyon
Bradi5g12010 2.0kb upstream 2.0kb upstream 10845 true Bd5: 15608229-15619073 Brachypodium distachyon
Bradi5g12010 2.0kb upstream 2.0kb upstream 2000 false Bd5: 15608229-15610228 Brachypodium distachyon
Bradi5g12010 2.0kb downstream 2.0kb downstream 10845 true Bd5: 15610229-15621073 Brachypodium distachyon
Bradi5g12010 2.0kb downstream 2.0kb downstream 2000 false Bd5: 15619074-15621073 Brachypodium distachyon
Bradi5g12010 5.0kb upstream 5.0kb upstream 13845 true Bd5: 15605229-15619073 Brachypodium distachyon
Bradi5g12010 5.0kb upstream 5.0kb upstream 5000 false Bd5: 15605229-15610228 Brachypodium distachyon
Bradi5g12010 5.0kb downstream 5.0kb downstream 13845 true Bd5: 15610229-15624073 Brachypodium distachyon
Bradi5g12010 5.0kb downstream 5.0kb downstream 5000 false Bd5: 15619074-15624073 Brachypodium distachyon
Bradi5g12010 10.0kb upstream 10.0kb upstream 18845 true Bd5: 15600229-15619073 Brachypodium distachyon
Bradi5g12010 10.0kb upstream 10.0kb upstream 10000 false Bd5: 15600229-15610228 Brachypodium distachyon
Bradi5g12010 10.0kb downstream 10.0kb downstream 18845 true Bd5: 15610229-15629073 Brachypodium distachyon
Bradi5g12010 10.0kb downstream 10.0kb downstream 10000 false Bd5: 15619074-15629073 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580617 5269 Grass View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.166        
cufflinks 0.27        
cufflinks 0.331        
cufflinks 0.242        
cufflinks 0.17        
cufflinks 0.187        
cufflinks 0.225        
cufflinks 0.173        
cufflinks 0.198        
cufflinks 0.15        
cufflinks 0.582       High
cufflinks 0.228        
cufflinks 0.23        
cufflinks 0.318        
cufflinks 0.114       Low
cufflinks 0.28        
cufflinks 0.252        
cufflinks 0.305        
cufflinks 0.295        
cufflinks 0.088     Low Low
cufflinks 0.207        
cufflinks 0.258        
cufflinks 0.178        
cufflinks 0.175        
cufflinks 0.205        
cufflinks 0.272        
cufflinks 0.33        
cufflinks 0.264        
cufflinks 0.292        
cufflinks 0.227        

0 Strain