Gene : Bradi1g65860 B. distachyon v3.1
Defline:  (1 of 158) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  8317
Name:  ? Bradi1g65860 Secondary Identifier:  ? PAC:32798069
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g65860 0.5kb upstream 0.5kb upstream 9817 true Bd1: 64987971-64997787 Brachypodium distachyon
Bradi1g65860 0.5kb upstream 0.5kb upstream 500 false Bd1: 64987971-64988470 Brachypodium distachyon
Bradi1g65860 0.5kb downstream 0.5kb downstream 9817 true Bd1: 64988471-64998287 Brachypodium distachyon
Bradi1g65860 0.5kb downstream 0.5kb downstream 500 false Bd1: 64997788-64998287 Brachypodium distachyon
Bradi1g65860 1.0kb upstream 1.0kb upstream 10317 true Bd1: 64987471-64997787 Brachypodium distachyon
Bradi1g65860 1.0kb upstream 1.0kb upstream 1000 false Bd1: 64987471-64988470 Brachypodium distachyon
Bradi1g65860 1.0kb downstream 1.0kb downstream 10317 true Bd1: 64988471-64998787 Brachypodium distachyon
Bradi1g65860 1.0kb downstream 1.0kb downstream 1000 false Bd1: 64997788-64998787 Brachypodium distachyon
Bradi1g65860 2.0kb upstream 2.0kb upstream 11317 true Bd1: 64986471-64997787 Brachypodium distachyon
Bradi1g65860 2.0kb upstream 2.0kb upstream 2000 false Bd1: 64986471-64988470 Brachypodium distachyon
Bradi1g65860 2.0kb downstream 2.0kb downstream 11317 true Bd1: 64988471-64999787 Brachypodium distachyon
Bradi1g65860 2.0kb downstream 2.0kb downstream 2000 false Bd1: 64997788-64999787 Brachypodium distachyon
Bradi1g65860 5.0kb upstream 5.0kb upstream 14317 true Bd1: 64983471-64997787 Brachypodium distachyon
Bradi1g65860 5.0kb upstream 5.0kb upstream 5000 false Bd1: 64983471-64988470 Brachypodium distachyon
Bradi1g65860 5.0kb downstream 5.0kb downstream 14317 true Bd1: 64988471-65002787 Brachypodium distachyon
Bradi1g65860 5.0kb downstream 5.0kb downstream 5000 false Bd1: 64997788-65002787 Brachypodium distachyon
Bradi1g65860 10.0kb upstream 10.0kb upstream 19317 true Bd1: 64978471-64997787 Brachypodium distachyon
Bradi1g65860 10.0kb upstream 10.0kb upstream 10000 false Bd1: 64978471-64988470 Brachypodium distachyon
Bradi1g65860 10.0kb downstream 10.0kb downstream 19317 true Bd1: 64988471-65007787 Brachypodium distachyon
Bradi1g65860 10.0kb downstream 10.0kb downstream 10000 false Bd1: 64997788-65007787 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571137 5269 Grass View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.91        
cufflinks 7.428       High
cufflinks 4.246        
cufflinks 3.98        
cufflinks 0.73       Low
cufflinks 7.577       High
cufflinks 7.368       High
cufflinks 1.249        
cufflinks 4.285        
cufflinks 0.827       Low
cufflinks 5.792        
cufflinks 4.481        
cufflinks 6.099        
cufflinks 5.613        
cufflinks 0.949       Low
cufflinks 9.137       High
cufflinks 1.961        
cufflinks 2.457        
cufflinks 3.211        
cufflinks 0.112     Low Low
cufflinks 2.236        
cufflinks 1.516        
cufflinks 1.239        
cufflinks 4.377        
cufflinks 6.264        
cufflinks 3.404        
cufflinks 7.167       High
cufflinks 2.585        
cufflinks 1.925        
cufflinks 4.003        

0 Strain