Gene : Bradi5g11340 B. distachyon v3.1

Defline:  (1 of 2) PTHR11689//PTHR11689:SF88 - CHLORIDE CHANNEL // SUBFAMILY NOT NAMED Genomic Order:  1232
Name:  ? Bradi5g11340 Secondary Identifier:  ? PAC:32811516

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g11340 0.5kb upstream 0.5kb upstream 8882 true Bd5: 15037447-15046328 Brachypodium distachyon
Bradi5g11340 0.5kb upstream 0.5kb upstream 500 false Bd5: 15037447-15037946 Brachypodium distachyon
Bradi5g11340 0.5kb downstream 0.5kb downstream 8882 true Bd5: 15037947-15046828 Brachypodium distachyon
Bradi5g11340 0.5kb downstream 0.5kb downstream 500 false Bd5: 15046329-15046828 Brachypodium distachyon
Bradi5g11340 1.0kb upstream 1.0kb upstream 9382 true Bd5: 15036947-15046328 Brachypodium distachyon
Bradi5g11340 1.0kb upstream 1.0kb upstream 1000 false Bd5: 15036947-15037946 Brachypodium distachyon
Bradi5g11340 1.0kb downstream 1.0kb downstream 9382 true Bd5: 15037947-15047328 Brachypodium distachyon
Bradi5g11340 1.0kb downstream 1.0kb downstream 1000 false Bd5: 15046329-15047328 Brachypodium distachyon
Bradi5g11340 2.0kb upstream 2.0kb upstream 10382 true Bd5: 15035947-15046328 Brachypodium distachyon
Bradi5g11340 2.0kb upstream 2.0kb upstream 2000 false Bd5: 15035947-15037946 Brachypodium distachyon
Bradi5g11340 2.0kb downstream 2.0kb downstream 10382 true Bd5: 15037947-15048328 Brachypodium distachyon
Bradi5g11340 2.0kb downstream 2.0kb downstream 2000 false Bd5: 15046329-15048328 Brachypodium distachyon
Bradi5g11340 5.0kb upstream 5.0kb upstream 13382 true Bd5: 15032947-15046328 Brachypodium distachyon
Bradi5g11340 5.0kb upstream 5.0kb upstream 5000 false Bd5: 15032947-15037946 Brachypodium distachyon
Bradi5g11340 5.0kb downstream 5.0kb downstream 13382 true Bd5: 15037947-15051328 Brachypodium distachyon
Bradi5g11340 5.0kb downstream 5.0kb downstream 5000 false Bd5: 15046329-15051328 Brachypodium distachyon
Bradi5g11340 10.0kb upstream 10.0kb upstream 18382 true Bd5: 15027947-15046328 Brachypodium distachyon
Bradi5g11340 10.0kb upstream 10.0kb upstream 10000 false Bd5: 15027947-15037946 Brachypodium distachyon
Bradi5g11340 10.0kb downstream 10.0kb downstream 18382 true Bd5: 15037947-15056328 Brachypodium distachyon
Bradi5g11340 10.0kb downstream 10.0kb downstream 10000 false Bd5: 15046329-15056328 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579761 5269 Grass View MSA
122047226 5273 Angiosperm View MSA
121350154 5274 Embryophyte View MSA
123428433 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.463        
cufflinks 6.419        
cufflinks 6.493        
cufflinks 5.364        
cufflinks 42.94     High High
cufflinks 6.468        
cufflinks 6.036        
cufflinks 5.65        
cufflinks 5.439        
cufflinks 5.004        
cufflinks 8.986     High  
cufflinks 8.328        
cufflinks 6.595        
cufflinks 5.622        
cufflinks 7.396        
cufflinks 5.928        
cufflinks 4.897        
cufflinks 5.606        
cufflinks 15.807     High High
cufflinks 17.714     High High
cufflinks 3.576       Low
cufflinks 6.299        
cufflinks 5.828        
cufflinks 6.04        
cufflinks 5.353        
cufflinks 6.886        
cufflinks 7.464        
cufflinks 6.635        
cufflinks 5.876        
cufflinks 6.902        

0 Strain