Gene : Bradi1g71400 B. distachyon v3.1
Defline:  (1 of 1) PTHR11618//PTHR11618:SF26 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED // SUBFAMILY NOT NAMED Genomic Order:  9030
Name:  ? Bradi1g71400 Secondary Identifier:  ? PAC:32800974
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g71400 0.5kb upstream 0.5kb upstream 3225 true Bd1: 69623171-69626395 Brachypodium distachyon
Bradi1g71400 0.5kb upstream 0.5kb upstream 500 false Bd1: 69623171-69623670 Brachypodium distachyon
Bradi1g71400 0.5kb downstream 0.5kb downstream 3225 true Bd1: 69623671-69626895 Brachypodium distachyon
Bradi1g71400 0.5kb downstream 0.5kb downstream 500 false Bd1: 69626396-69626895 Brachypodium distachyon
Bradi1g71400 1.0kb upstream 1.0kb upstream 3725 true Bd1: 69622671-69626395 Brachypodium distachyon
Bradi1g71400 1.0kb upstream 1.0kb upstream 1000 false Bd1: 69622671-69623670 Brachypodium distachyon
Bradi1g71400 1.0kb downstream 1.0kb downstream 3725 true Bd1: 69623671-69627395 Brachypodium distachyon
Bradi1g71400 1.0kb downstream 1.0kb downstream 1000 false Bd1: 69626396-69627395 Brachypodium distachyon
Bradi1g71400 2.0kb upstream 2.0kb upstream 4725 true Bd1: 69621671-69626395 Brachypodium distachyon
Bradi1g71400 2.0kb upstream 2.0kb upstream 2000 false Bd1: 69621671-69623670 Brachypodium distachyon
Bradi1g71400 2.0kb downstream 2.0kb downstream 4725 true Bd1: 69623671-69628395 Brachypodium distachyon
Bradi1g71400 2.0kb downstream 2.0kb downstream 2000 false Bd1: 69626396-69628395 Brachypodium distachyon
Bradi1g71400 5.0kb upstream 5.0kb upstream 7725 true Bd1: 69618671-69626395 Brachypodium distachyon
Bradi1g71400 5.0kb upstream 5.0kb upstream 5000 false Bd1: 69618671-69623670 Brachypodium distachyon
Bradi1g71400 5.0kb downstream 5.0kb downstream 7725 true Bd1: 69623671-69631395 Brachypodium distachyon
Bradi1g71400 5.0kb downstream 5.0kb downstream 5000 false Bd1: 69626396-69631395 Brachypodium distachyon
Bradi1g71400 10.0kb upstream 10.0kb upstream 12725 true Bd1: 69613671-69626395 Brachypodium distachyon
Bradi1g71400 10.0kb upstream 10.0kb upstream 10000 false Bd1: 69613671-69623670 Brachypodium distachyon
Bradi1g71400 10.0kb downstream 10.0kb downstream 12725 true Bd1: 69623671-69636395 Brachypodium distachyon
Bradi1g71400 10.0kb downstream 10.0kb downstream 10000 false Bd1: 69626396-69636395 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572824 5269 Grass View MSA
122046591 5273 Angiosperm View MSA
121310628 5274 Embryophyte View MSA
123348063 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.002       Low
cufflinks 3.242        
cufflinks 2.877        
cufflinks 2.894        
cufflinks 1.981       Low
cufflinks 2.899        
cufflinks 3.133        
cufflinks 3.642        
cufflinks 3.125        
cufflinks 2.725        
cufflinks 5.242       High
cufflinks 2.885        
cufflinks 2.976        
cufflinks 3.46        
cufflinks 2.221       Low
cufflinks 3.309        
cufflinks 3.135        
cufflinks 4.477       High
cufflinks 6.419       High
cufflinks 3.69        
cufflinks 4.614       High
cufflinks 3.292        
cufflinks 3.184        
cufflinks 2.987        
cufflinks 2.522        
cufflinks 2.646        
cufflinks 3.37        
cufflinks 2.913        
cufflinks 2.779        
cufflinks 3.538        

0 Strain