Gene : Bradi1g71660 B. distachyon v3.1
Defline:  (1 of 2) PTHR20978:SF0 - SPLICING FACTOR 3B SUBUNIT 5 Genomic Order:  9064
Name:  ? Bradi1g71660 Secondary Identifier:  ? PAC:32804732
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g71660 0.5kb upstream 0.5kb upstream 3387 true Bd1: 69846330-69849716 Brachypodium distachyon
Bradi1g71660 0.5kb upstream 0.5kb upstream 500 false Bd1: 69849217-69849716 Brachypodium distachyon
Bradi1g71660 0.5kb downstream 0.5kb downstream 3387 true Bd1: 69845830-69849216 Brachypodium distachyon
Bradi1g71660 0.5kb downstream 0.5kb downstream 500 false Bd1: 69845830-69846329 Brachypodium distachyon
Bradi1g71660 1.0kb upstream 1.0kb upstream 3887 true Bd1: 69846330-69850216 Brachypodium distachyon
Bradi1g71660 1.0kb upstream 1.0kb upstream 1000 false Bd1: 69849217-69850216 Brachypodium distachyon
Bradi1g71660 1.0kb downstream 1.0kb downstream 3887 true Bd1: 69845330-69849216 Brachypodium distachyon
Bradi1g71660 1.0kb downstream 1.0kb downstream 1000 false Bd1: 69845330-69846329 Brachypodium distachyon
Bradi1g71660 2.0kb upstream 2.0kb upstream 4887 true Bd1: 69846330-69851216 Brachypodium distachyon
Bradi1g71660 2.0kb upstream 2.0kb upstream 2000 false Bd1: 69849217-69851216 Brachypodium distachyon
Bradi1g71660 2.0kb downstream 2.0kb downstream 4887 true Bd1: 69844330-69849216 Brachypodium distachyon
Bradi1g71660 2.0kb downstream 2.0kb downstream 2000 false Bd1: 69844330-69846329 Brachypodium distachyon
Bradi1g71660 5.0kb upstream 5.0kb upstream 7887 true Bd1: 69846330-69854216 Brachypodium distachyon
Bradi1g71660 5.0kb upstream 5.0kb upstream 5000 false Bd1: 69849217-69854216 Brachypodium distachyon
Bradi1g71660 5.0kb downstream 5.0kb downstream 7887 true Bd1: 69841330-69849216 Brachypodium distachyon
Bradi1g71660 5.0kb downstream 5.0kb downstream 5000 false Bd1: 69841330-69846329 Brachypodium distachyon
Bradi1g71660 10.0kb upstream 10.0kb upstream 12887 true Bd1: 69846330-69859216 Brachypodium distachyon
Bradi1g71660 10.0kb upstream 10.0kb upstream 10000 false Bd1: 69849217-69859216 Brachypodium distachyon
Bradi1g71660 10.0kb downstream 10.0kb downstream 12887 true Bd1: 69836330-69849216 Brachypodium distachyon
Bradi1g71660 10.0kb downstream 10.0kb downstream 10000 false Bd1: 69836330-69846329 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027648 5273 Angiosperm View MSA
124576348 5269 Grass View MSA
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.553     High  
cufflinks 13.158     High  
cufflinks 12.897     High  
cufflinks 14.306     High  
cufflinks 11.609     High  
cufflinks 10.574     High  
cufflinks 12.462     High  
cufflinks 10.599     High  
cufflinks 9.607     High  
cufflinks 12.376     High  
cufflinks 6.645       Low
cufflinks 9.561     High  
cufflinks 5.092       Low
cufflinks 5.425       Low
cufflinks 8.166        
cufflinks 10.869     High  
cufflinks 19.614     High High
cufflinks 20.142     High High
cufflinks 18.838     High High
cufflinks 8.643        
cufflinks 25.686     High High
cufflinks 9.227        
cufflinks 10.181     High  
cufflinks 10.446     High  
cufflinks 13.496     High  
cufflinks 13.948     High  
cufflinks 5.416       Low
cufflinks 12.113     High  
cufflinks 10.941     High  
cufflinks 20.775     High High

0 Strain