Gene : Bradi5g08960 B. distachyon v3.1
Defline:  (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) Genomic Order:  893
Name:  ? Bradi5g08960 Secondary Identifier:  ? PAC:32808985
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6303 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g08960 0.5kb upstream 0.5kb upstream 5508 true Bd5: 12222081-12227588 Brachypodium distachyon
Bradi5g08960 0.5kb upstream 0.5kb upstream 500 false Bd5: 12227089-12227588 Brachypodium distachyon
Bradi5g08960 0.5kb downstream 0.5kb downstream 5508 true Bd5: 12221581-12227088 Brachypodium distachyon
Bradi5g08960 0.5kb downstream 0.5kb downstream 500 false Bd5: 12221581-12222080 Brachypodium distachyon
Bradi5g08960 1.0kb upstream 1.0kb upstream 6008 true Bd5: 12222081-12228088 Brachypodium distachyon
Bradi5g08960 1.0kb upstream 1.0kb upstream 1000 false Bd5: 12227089-12228088 Brachypodium distachyon
Bradi5g08960 1.0kb downstream 1.0kb downstream 6008 true Bd5: 12221081-12227088 Brachypodium distachyon
Bradi5g08960 1.0kb downstream 1.0kb downstream 1000 false Bd5: 12221081-12222080 Brachypodium distachyon
Bradi5g08960 2.0kb upstream 2.0kb upstream 7008 true Bd5: 12222081-12229088 Brachypodium distachyon
Bradi5g08960 2.0kb upstream 2.0kb upstream 2000 false Bd5: 12227089-12229088 Brachypodium distachyon
Bradi5g08960 2.0kb downstream 2.0kb downstream 7008 true Bd5: 12220081-12227088 Brachypodium distachyon
Bradi5g08960 2.0kb downstream 2.0kb downstream 2000 false Bd5: 12220081-12222080 Brachypodium distachyon
Bradi5g08960 5.0kb upstream 5.0kb upstream 10008 true Bd5: 12222081-12232088 Brachypodium distachyon
Bradi5g08960 5.0kb upstream 5.0kb upstream 5000 false Bd5: 12227089-12232088 Brachypodium distachyon
Bradi5g08960 5.0kb downstream 5.0kb downstream 10008 true Bd5: 12217081-12227088 Brachypodium distachyon
Bradi5g08960 5.0kb downstream 5.0kb downstream 5000 false Bd5: 12217081-12222080 Brachypodium distachyon
Bradi5g08960 10.0kb upstream 10.0kb upstream 15008 true Bd5: 12222081-12237088 Brachypodium distachyon
Bradi5g08960 10.0kb upstream 10.0kb upstream 10000 false Bd5: 12227089-12237088 Brachypodium distachyon
Bradi5g08960 10.0kb downstream 10.0kb downstream 15008 true Bd5: 12212081-12227088 Brachypodium distachyon
Bradi5g08960 10.0kb downstream 10.0kb downstream 10000 false Bd5: 12212081-12222080 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569339 5269 Grass View MSA
122044071 5273 Angiosperm View MSA
121345881 5274 Embryophyte View MSA
123427638 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.624        
cufflinks 3.654        
cufflinks 4.643        
cufflinks 4.665        
cufflinks 5.13        
cufflinks 3.556        
cufflinks 3.304        
cufflinks 3.456        
cufflinks 3.525        
cufflinks 4.76        
cufflinks 5.631        
cufflinks 3.612        
cufflinks 3.73        
cufflinks 5.176        
cufflinks 4.886        
cufflinks 3.219        
cufflinks 4.394        
cufflinks 0.941       Low
cufflinks 7.542       High
cufflinks 13.26     High High
cufflinks 3.554        
cufflinks 4.107        
cufflinks 3.622        
cufflinks 3.525        
cufflinks 3.382        
cufflinks 4.89        
cufflinks 5.82        
cufflinks 4.821        
cufflinks 4.68        
cufflinks 3.542        

0 Strain