Gene : Bradi5g09708 B. distachyon v3.1
Defline:  (1 of 19) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  997
Name:  ? Bradi5g09708 Secondary Identifier:  ? PAC:32808259
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g09708 0.5kb upstream 0.5kb upstream 3248 true Bd5: 13166829-13170076 Brachypodium distachyon
Bradi5g09708 0.5kb upstream 0.5kb upstream 500 false Bd5: 13166829-13167328 Brachypodium distachyon
Bradi5g09708 0.5kb downstream 0.5kb downstream 3248 true Bd5: 13167329-13170576 Brachypodium distachyon
Bradi5g09708 0.5kb downstream 0.5kb downstream 500 false Bd5: 13170077-13170576 Brachypodium distachyon
Bradi5g09708 1.0kb upstream 1.0kb upstream 3748 true Bd5: 13166329-13170076 Brachypodium distachyon
Bradi5g09708 1.0kb upstream 1.0kb upstream 1000 false Bd5: 13166329-13167328 Brachypodium distachyon
Bradi5g09708 1.0kb downstream 1.0kb downstream 3748 true Bd5: 13167329-13171076 Brachypodium distachyon
Bradi5g09708 1.0kb downstream 1.0kb downstream 1000 false Bd5: 13170077-13171076 Brachypodium distachyon
Bradi5g09708 2.0kb upstream 2.0kb upstream 4748 true Bd5: 13165329-13170076 Brachypodium distachyon
Bradi5g09708 2.0kb upstream 2.0kb upstream 2000 false Bd5: 13165329-13167328 Brachypodium distachyon
Bradi5g09708 2.0kb downstream 2.0kb downstream 4748 true Bd5: 13167329-13172076 Brachypodium distachyon
Bradi5g09708 2.0kb downstream 2.0kb downstream 2000 false Bd5: 13170077-13172076 Brachypodium distachyon
Bradi5g09708 5.0kb upstream 5.0kb upstream 7748 true Bd5: 13162329-13170076 Brachypodium distachyon
Bradi5g09708 5.0kb upstream 5.0kb upstream 5000 false Bd5: 13162329-13167328 Brachypodium distachyon
Bradi5g09708 5.0kb downstream 5.0kb downstream 7748 true Bd5: 13167329-13175076 Brachypodium distachyon
Bradi5g09708 5.0kb downstream 5.0kb downstream 5000 false Bd5: 13170077-13175076 Brachypodium distachyon
Bradi5g09708 10.0kb upstream 10.0kb upstream 12748 true Bd5: 13157329-13170076 Brachypodium distachyon
Bradi5g09708 10.0kb upstream 10.0kb upstream 10000 false Bd5: 13157329-13167328 Brachypodium distachyon
Bradi5g09708 10.0kb downstream 10.0kb downstream 12748 true Bd5: 13167329-13180076 Brachypodium distachyon
Bradi5g09708 10.0kb downstream 10.0kb downstream 10000 false Bd5: 13170077-13180076 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121996241 5273 Angiosperm View MSA
124591012 5269 Grass View MSA
121266409 5274 Embryophyte View MSA
123304751 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low Low
cufflinks 0.005     Low Low
cufflinks 0.024     Low  
cufflinks 0.01     Low  
cufflinks 0.02     Low  
cufflinks 0.01     Low  
cufflinks 0.023     Low  
cufflinks 0.055     Low High
cufflinks 0.009     Low  
cufflinks 0.035     Low High
cufflinks 0.019     Low  
cufflinks 0.017     Low  
cufflinks 0.035     Low High
cufflinks 0.032     Low  
cufflinks 0.033     Low  
cufflinks 0.007     Low Low
cufflinks 0.016     Low  
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.058     Low High
cufflinks 0.008     Low Low
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.051     Low High
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain