Gene : Bradi1g71300 B. distachyon v3.1
Defline:  (1 of 3) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  9012
Name:  ? Bradi1g71300 Secondary Identifier:  ? PAC:32792496
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g71300 0.5kb upstream 0.5kb upstream 5647 true Bd1: 69539669-69545315 Brachypodium distachyon
Bradi1g71300 0.5kb upstream 0.5kb upstream 500 false Bd1: 69544816-69545315 Brachypodium distachyon
Bradi1g71300 0.5kb downstream 0.5kb downstream 5647 true Bd1: 69539169-69544815 Brachypodium distachyon
Bradi1g71300 0.5kb downstream 0.5kb downstream 500 false Bd1: 69539169-69539668 Brachypodium distachyon
Bradi1g71300 1.0kb upstream 1.0kb upstream 6147 true Bd1: 69539669-69545815 Brachypodium distachyon
Bradi1g71300 1.0kb upstream 1.0kb upstream 1000 false Bd1: 69544816-69545815 Brachypodium distachyon
Bradi1g71300 1.0kb downstream 1.0kb downstream 6147 true Bd1: 69538669-69544815 Brachypodium distachyon
Bradi1g71300 1.0kb downstream 1.0kb downstream 1000 false Bd1: 69538669-69539668 Brachypodium distachyon
Bradi1g71300 2.0kb upstream 2.0kb upstream 7147 true Bd1: 69539669-69546815 Brachypodium distachyon
Bradi1g71300 2.0kb upstream 2.0kb upstream 2000 false Bd1: 69544816-69546815 Brachypodium distachyon
Bradi1g71300 2.0kb downstream 2.0kb downstream 7147 true Bd1: 69537669-69544815 Brachypodium distachyon
Bradi1g71300 2.0kb downstream 2.0kb downstream 2000 false Bd1: 69537669-69539668 Brachypodium distachyon
Bradi1g71300 5.0kb upstream 5.0kb upstream 10147 true Bd1: 69539669-69549815 Brachypodium distachyon
Bradi1g71300 5.0kb upstream 5.0kb upstream 5000 false Bd1: 69544816-69549815 Brachypodium distachyon
Bradi1g71300 5.0kb downstream 5.0kb downstream 10147 true Bd1: 69534669-69544815 Brachypodium distachyon
Bradi1g71300 5.0kb downstream 5.0kb downstream 5000 false Bd1: 69534669-69539668 Brachypodium distachyon
Bradi1g71300 10.0kb upstream 10.0kb upstream 15147 true Bd1: 69539669-69554815 Brachypodium distachyon
Bradi1g71300 10.0kb upstream 10.0kb upstream 10000 false Bd1: 69544816-69554815 Brachypodium distachyon
Bradi1g71300 10.0kb downstream 10.0kb downstream 15147 true Bd1: 69529669-69544815 Brachypodium distachyon
Bradi1g71300 10.0kb downstream 10.0kb downstream 10000 false Bd1: 69529669-69539668 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589180 5269 Grass View MSA
122041756 5273 Angiosperm View MSA
121347508 5274 Embryophyte View MSA
123423893 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.95        
cufflinks 4.468        
cufflinks 4.337        
cufflinks 5.14        
cufflinks 2.988        
cufflinks 3.894        
cufflinks 3.798        
cufflinks 3.07        
cufflinks 3.47        
cufflinks 2.608        
cufflinks 1.487       Low
cufflinks 3.452        
cufflinks 0.818       Low
cufflinks 1.124       Low
cufflinks 2.547        
cufflinks 3.679        
cufflinks 4.619        
cufflinks 6.851       High
cufflinks 4.127        
cufflinks 2.092        
cufflinks 4.507        
cufflinks 3.005        
cufflinks 2.782        
cufflinks 3.048        
cufflinks 3.663        
cufflinks 3.987        
cufflinks 1.432       Low
cufflinks 3.518        
cufflinks 3.367        
cufflinks 5.662       High

0 Strain