Gene : Bradi1g77400 B. distachyon v3.1
Defline:  (1 of 1) K16908 - chloroplast NAD(P)H dehydrogenase (CRR1) Genomic Order:  9714
Name:  ? Bradi1g77400 Secondary Identifier:  ? PAC:32805892
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5097 Brachypodium distachyon pathologic  
Bdistachyon PWY-724 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g77400 0.5kb upstream 0.5kb upstream 3495 true Bd1: 73981642-73985136 Brachypodium distachyon
Bradi1g77400 0.5kb upstream 0.5kb upstream 500 false Bd1: 73981642-73982141 Brachypodium distachyon
Bradi1g77400 0.5kb downstream 0.5kb downstream 3495 true Bd1: 73982142-73985636 Brachypodium distachyon
Bradi1g77400 0.5kb downstream 0.5kb downstream 500 false Bd1: 73985137-73985636 Brachypodium distachyon
Bradi1g77400 1.0kb upstream 1.0kb upstream 3995 true Bd1: 73981142-73985136 Brachypodium distachyon
Bradi1g77400 1.0kb upstream 1.0kb upstream 1000 false Bd1: 73981142-73982141 Brachypodium distachyon
Bradi1g77400 1.0kb downstream 1.0kb downstream 3995 true Bd1: 73982142-73986136 Brachypodium distachyon
Bradi1g77400 1.0kb downstream 1.0kb downstream 1000 false Bd1: 73985137-73986136 Brachypodium distachyon
Bradi1g77400 2.0kb upstream 2.0kb upstream 4995 true Bd1: 73980142-73985136 Brachypodium distachyon
Bradi1g77400 2.0kb upstream 2.0kb upstream 2000 false Bd1: 73980142-73982141 Brachypodium distachyon
Bradi1g77400 2.0kb downstream 2.0kb downstream 4995 true Bd1: 73982142-73987136 Brachypodium distachyon
Bradi1g77400 2.0kb downstream 2.0kb downstream 2000 false Bd1: 73985137-73987136 Brachypodium distachyon
Bradi1g77400 5.0kb upstream 5.0kb upstream 7995 true Bd1: 73977142-73985136 Brachypodium distachyon
Bradi1g77400 5.0kb upstream 5.0kb upstream 5000 false Bd1: 73977142-73982141 Brachypodium distachyon
Bradi1g77400 5.0kb downstream 5.0kb downstream 7995 true Bd1: 73982142-73990136 Brachypodium distachyon
Bradi1g77400 5.0kb downstream 5.0kb downstream 5000 false Bd1: 73985137-73990136 Brachypodium distachyon
Bradi1g77400 10.0kb upstream 10.0kb upstream 12995 true Bd1: 73972142-73985136 Brachypodium distachyon
Bradi1g77400 10.0kb upstream 10.0kb upstream 10000 false Bd1: 73972142-73982141 Brachypodium distachyon
Bradi1g77400 10.0kb downstream 10.0kb downstream 12995 true Bd1: 73982142-73995136 Brachypodium distachyon
Bradi1g77400 10.0kb downstream 10.0kb downstream 10000 false Bd1: 73985137-73995136 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573924 5269 Grass View MSA
122042958 5273 Angiosperm View MSA
121344567 5274 Embryophyte View MSA
123380066 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.452     High  
cufflinks 29.03     High  
cufflinks 27.293     High  
cufflinks 35.251     High High
cufflinks 9.103     High  
cufflinks 20.827     High  
cufflinks 22.11     High  
cufflinks 12.701     High  
cufflinks 15.097     High  
cufflinks 27.252     High  
cufflinks 10.753     High  
cufflinks 16.126     High  
cufflinks 14.42     High  
cufflinks 11.976     High  
cufflinks 13.683     High  
cufflinks 20.891     High  
cufflinks 19.963     High  
cufflinks 0.92       Low
cufflinks 18.486     High  
cufflinks 2.008       Low
cufflinks 9.827        
cufflinks 23.489     High  
cufflinks 12.567     High  
cufflinks 14.928     High  
cufflinks 24.05     High  
cufflinks 33.669     High High
cufflinks 9.367     High  
cufflinks 32.997     High High
cufflinks 29.847     High  
cufflinks 13.428     High  

0 Strain