Gene : Bradi1g76177 B. distachyon v3.1
Defline:  (1 of 11) PF01476 - LysM domain (LysM) Genomic Order:  9564
Name:  ? Bradi1g76177 Secondary Identifier:  ? PAC:32792484
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g76177 0.5kb upstream 0.5kb upstream 3201 true Bd1: 73079251-73082451 Brachypodium distachyon
Bradi1g76177 0.5kb upstream 0.5kb upstream 500 false Bd1: 73081952-73082451 Brachypodium distachyon
Bradi1g76177 0.5kb downstream 0.5kb downstream 3201 true Bd1: 73078751-73081951 Brachypodium distachyon
Bradi1g76177 0.5kb downstream 0.5kb downstream 500 false Bd1: 73078751-73079250 Brachypodium distachyon
Bradi1g76177 1.0kb upstream 1.0kb upstream 3701 true Bd1: 73079251-73082951 Brachypodium distachyon
Bradi1g76177 1.0kb upstream 1.0kb upstream 1000 false Bd1: 73081952-73082951 Brachypodium distachyon
Bradi1g76177 1.0kb downstream 1.0kb downstream 3701 true Bd1: 73078251-73081951 Brachypodium distachyon
Bradi1g76177 1.0kb downstream 1.0kb downstream 1000 false Bd1: 73078251-73079250 Brachypodium distachyon
Bradi1g76177 2.0kb upstream 2.0kb upstream 4701 true Bd1: 73079251-73083951 Brachypodium distachyon
Bradi1g76177 2.0kb upstream 2.0kb upstream 2000 false Bd1: 73081952-73083951 Brachypodium distachyon
Bradi1g76177 2.0kb downstream 2.0kb downstream 4701 true Bd1: 73077251-73081951 Brachypodium distachyon
Bradi1g76177 2.0kb downstream 2.0kb downstream 2000 false Bd1: 73077251-73079250 Brachypodium distachyon
Bradi1g76177 5.0kb upstream 5.0kb upstream 7701 true Bd1: 73079251-73086951 Brachypodium distachyon
Bradi1g76177 5.0kb upstream 5.0kb upstream 5000 false Bd1: 73081952-73086951 Brachypodium distachyon
Bradi1g76177 5.0kb downstream 5.0kb downstream 7701 true Bd1: 73074251-73081951 Brachypodium distachyon
Bradi1g76177 5.0kb downstream 5.0kb downstream 5000 false Bd1: 73074251-73079250 Brachypodium distachyon
Bradi1g76177 10.0kb upstream 10.0kb upstream 12701 true Bd1: 73079251-73091951 Brachypodium distachyon
Bradi1g76177 10.0kb upstream 10.0kb upstream 10000 false Bd1: 73081952-73091951 Brachypodium distachyon
Bradi1g76177 10.0kb downstream 10.0kb downstream 12701 true Bd1: 73069251-73081951 Brachypodium distachyon
Bradi1g76177 10.0kb downstream 10.0kb downstream 10000 false Bd1: 73069251-73079250 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041196 5273 Angiosperm View MSA
124574991 5269 Grass View MSA
121350262 5274 Embryophyte View MSA
123381651 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.601     High High
cufflinks 4.133        
cufflinks 3.545        
cufflinks 3.113        
cufflinks 10.549     High High
cufflinks 2.995        
cufflinks 4.174        
cufflinks 2.589        
cufflinks 2.089       Low
cufflinks 5.388        
cufflinks 7.342        
cufflinks 4.365        
cufflinks 1.942       Low
cufflinks 2.177       Low
cufflinks 13.019     High High
cufflinks 3.673        
cufflinks 4.529        
cufflinks 6.855        
cufflinks 21.701     High High
cufflinks 15.829     High High
cufflinks 5.926        
cufflinks 3.316        
cufflinks 2.481        
cufflinks 2.104       Low
cufflinks 2.378        
cufflinks 4.04        
cufflinks 2.668        
cufflinks 3.82        
cufflinks 3.497        
cufflinks 7.855        

0 Strain