Gene : Bradi1g76470 B. distachyon v3.1
Defline:  (1 of 1) PTHR10836:SF39 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC Genomic Order:  9604
Name:  ? Bradi1g76470 Secondary Identifier:  ? PAC:32801335
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-1042 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g76470 0.5kb upstream 0.5kb upstream 3071 true Bd1: 73296892-73299962 Brachypodium distachyon
Bradi1g76470 0.5kb upstream 0.5kb upstream 500 false Bd1: 73299463-73299962 Brachypodium distachyon
Bradi1g76470 0.5kb downstream 0.5kb downstream 3071 true Bd1: 73296392-73299462 Brachypodium distachyon
Bradi1g76470 0.5kb downstream 0.5kb downstream 500 false Bd1: 73296392-73296891 Brachypodium distachyon
Bradi1g76470 1.0kb upstream 1.0kb upstream 3571 true Bd1: 73296892-73300462 Brachypodium distachyon
Bradi1g76470 1.0kb upstream 1.0kb upstream 1000 false Bd1: 73299463-73300462 Brachypodium distachyon
Bradi1g76470 1.0kb downstream 1.0kb downstream 3571 true Bd1: 73295892-73299462 Brachypodium distachyon
Bradi1g76470 1.0kb downstream 1.0kb downstream 1000 false Bd1: 73295892-73296891 Brachypodium distachyon
Bradi1g76470 2.0kb upstream 2.0kb upstream 4571 true Bd1: 73296892-73301462 Brachypodium distachyon
Bradi1g76470 2.0kb upstream 2.0kb upstream 2000 false Bd1: 73299463-73301462 Brachypodium distachyon
Bradi1g76470 2.0kb downstream 2.0kb downstream 4571 true Bd1: 73294892-73299462 Brachypodium distachyon
Bradi1g76470 2.0kb downstream 2.0kb downstream 2000 false Bd1: 73294892-73296891 Brachypodium distachyon
Bradi1g76470 5.0kb upstream 5.0kb upstream 7571 true Bd1: 73296892-73304462 Brachypodium distachyon
Bradi1g76470 5.0kb upstream 5.0kb upstream 5000 false Bd1: 73299463-73304462 Brachypodium distachyon
Bradi1g76470 5.0kb downstream 5.0kb downstream 7571 true Bd1: 73291892-73299462 Brachypodium distachyon
Bradi1g76470 5.0kb downstream 5.0kb downstream 5000 false Bd1: 73291892-73296891 Brachypodium distachyon
Bradi1g76470 10.0kb upstream 10.0kb upstream 12571 true Bd1: 73296892-73309462 Brachypodium distachyon
Bradi1g76470 10.0kb upstream 10.0kb upstream 10000 false Bd1: 73299463-73309462 Brachypodium distachyon
Bradi1g76470 10.0kb downstream 10.0kb downstream 12571 true Bd1: 73286892-73299462 Brachypodium distachyon
Bradi1g76470 10.0kb downstream 10.0kb downstream 10000 false Bd1: 73286892-73296891 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578488 5269 Grass View MSA
122047323 5273 Angiosperm View MSA
121310728 5274 Embryophyte View MSA
123425156 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 294.879     High  
cufflinks 331.877     High  
cufflinks 550.063     High  
cufflinks 622.584     High  
cufflinks 126.718     High  
cufflinks 219.388     High  
cufflinks 253.097     High  
cufflinks 338.887     High  
cufflinks 256.137     High  
cufflinks 421.731     High  
cufflinks 210.141     High  
cufflinks 182.537     High  
cufflinks 348.462     High  
cufflinks 338.61     High  
cufflinks 324.836     High  
cufflinks 226.847     High  
cufflinks 291.611     High  
cufflinks 1.77       Low
cufflinks 294.573     High  
cufflinks 35.745     High Low
cufflinks 72.941     High  
cufflinks 262.291     High  
cufflinks 396.115     High  
cufflinks 281.458     High  
cufflinks 266.422     High  
cufflinks 552.109     High  
cufflinks 298.075     High  
cufflinks 658.513     High  
cufflinks 485.476     High  
cufflinks 49.371     High Low

0 Strain